View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10054_low_1 (Length: 1021)

Name: NF10054_low_1
Description: NF10054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10054_low_1
NF10054_low_1
[»] chr4 (4 HSPs)
chr4 (1-1004)||(17432707-17433710)
chr4 (148-255)||(8718017-8718125)
chr4 (181-255)||(10583738-10583812)
chr4 (435-487)||(25642189-25642242)
[»] chr8 (5 HSPs)
chr8 (152-268)||(26280042-26280159)
chr8 (203-246)||(11917834-11917877)
chr8 (205-299)||(40743469-40743563)
chr8 (203-246)||(11910073-11910116)
chr8 (210-320)||(39812749-39812859)
[»] chr5 (9 HSPs)
chr5 (149-300)||(13002513-13002665)
chr5 (149-300)||(13077171-13077323)
chr5 (610-787)||(16550631-16550808)
chr5 (46-328)||(16551030-16551318)
chr5 (610-754)||(13002070-13002211)
chr5 (610-754)||(13076728-13076869)
chr5 (170-255)||(18220873-18220958)
chr5 (166-255)||(18476268-18476357)
chr5 (64-128)||(2136520-2136587)
[»] chr1 (5 HSPs)
chr1 (152-255)||(32044576-32044681)
chr1 (166-246)||(20618060-20618140)
chr1 (662-753)||(32268582-32268673)
chr1 (176-251)||(19623639-19623714)
chr1 (205-276)||(8933978-8934049)
[»] chr2 (4 HSPs)
chr2 (166-300)||(27728301-27728435)
chr2 (148-299)||(22116514-22116666)
chr2 (148-255)||(15583007-15583116)
chr2 (436-503)||(22116797-22116864)
[»] scaffold0149 (1 HSPs)
scaffold0149 (164-263)||(32029-32128)
[»] chr6 (3 HSPs)
chr6 (165-246)||(15549447-15549528)
chr6 (205-254)||(28609206-28609255)
chr6 (46-178)||(28608993-28609129)
[»] chr7 (6 HSPs)
chr7 (166-255)||(7395178-7395267)
chr7 (148-264)||(31611811-31611928)
chr7 (205-255)||(19416366-19416416)
chr7 (178-255)||(27128755-27128831)
chr7 (65-243)||(29020652-29020840)
chr7 (727-770)||(31611321-31611364)
[»] scaffold0498 (1 HSPs)
scaffold0498 (166-255)||(2845-2934)
[»] scaffold0078 (1 HSPs)
scaffold0078 (181-246)||(18518-18583)
[»] scaffold0496 (1 HSPs)
scaffold0496 (166-220)||(9629-9683)


Alignment Details
Target: chr4 (Bit Score: 910; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 910; E-Value: 0
Query Start/End: Original strand, 1 - 1004
Target Start/End: Complemental strand, 17433710 - 17432707
Alignment:
Q  1 ttaatacatttagagagaaaaacatagagaggaagttgtgagtatcaccataagaaagctagcgagcttggattcaagcttgttcatgcttctccaacaa 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433710 ttaatgcatttagagagaaaaacatagagaggaagttgtgagtatcaccataagaaagctagcgagcttggattcaagcttgttcatgcttctccaacaa 17433611  T
Q  101 ccaacctttctttgttagttatgctctcactagctaactgaactctctgtgttgggattagatttaatagctaggattctatgtagcactcttagtctgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433610 ccaacctttctttgttagttatgctctcactagctaactgaactctctgtgttgggattagatttaatagctaggattctatgtagcactcttagtctgg 17433511  T
Q  201 ctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttacggcttttgccgacgtgcaattcgtaaatgaacttttgatttagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17433510 ctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgcttttgccgacgtgcaattcgtaaatgaacttttgatttagt 17433411  T
Q  301 ttaagtaaagaattgccttaatatctaacgtacatatctggtttacaccgtgtgtaggtgttaatactcaagaaatagcgattaggtctatattcatgta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17433410 ttaagtaaagaattgccttaatatctaacgtacatatctggtttacaccgtgtgtaggtgttaatactcaagaaatagcgattaggtctatgttcatgta 17433311  T
Q  401 aaactatatggttgtatgccattnnnnnnnnnttggctattttgccaccgagcattgaaagtcagttggtttaatggatcttgcatcatcatccaggaat 500  Q
    |||||||||||||||||||||||         || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  17433310 aaactatatggttgtatgccattaaaaaaaaattagctattttgccaccgagcattgaaagtcaattggtttaatggattttgcatcatcatccaggaat 17433211  T
Q  501 ggagatgtgtgccaagggatgagtggagttatatttgaagnnnnnnnnngtatgcaattgattaagtggaaacattagatgggatgttatccaaattgaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433210 ggagatgtgtgccaagggatgagtggagttatatttgaaggaaaaaaaagtatgcaattgattaagtggaaacattagatgggatgttatccaaattgaa 17433111  T
Q  601 tccgacgataactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaa 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433110 tccgacgataactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaa 17433011  T
Q  701 acgatcaaaactaagtctagtctttatggttcgatacaatttatttttgataaaaccgacacaatacttaatattgtatgaggataggtaaggatcatct 800  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17433010 acgatcaaaactaagtccagtctttgtggttcgatacaatttatttttgataaaaccaacacaatacttaatattgtatgaggataggtaaggatcatct 17432911  T
Q  801 ttatcactctcttctatggcctgagttctcaagttgtatattctatatgcatttgaggtggtagagtatccaagaaagattctctagtcttacttagagt 900  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432910 ttatcactctcttctatggtctgagttctcaagttgtatattctatatgcatttgaggtggtagagtatccaagaaagattctctagtcttacttagagt 17432811  T
Q  901 caaattttccaagagcaacgtgatgcttagaggaagcttgtttctttcgatgttttgatgtctcaatgatgttttatggttatgagatttagggtgtcgg 1000  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432810 caaattttccaagagcaacgtgatgcttagaggaagcttgtttctttcgatgttttgatgtctcaatgatgttttatggttatgagatttagggtgtcgg 17432711  T
Q  1001 acat 1004  Q
    ||||    
T  17432710 acat 17432707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 8718125 - 8718017
Alignment:
Q  148 tgtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    |||||||||||| ||| ||| ||| ||||||| |||| || ||||||| | |||||| ||||||  |||||||||||| |||||||||||| ||||||||    
T  8718125 tgtgttgggattggatgtaaatagttaggattttatgcagtactcttaatatggctggttgtattcgatttatgcatttaatataatctttagtttaaat 8718026  T
Q  247 gtgttctta 255  Q
     ||||||||    
T  8718025 atgttctta 8718017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 10583738 - 10583812
Alignment:
Q  181 atgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 255  Q
    |||||| ||||||| |||||||| ||||||||||||| |||||||||| |||||||| ||||||||  |||||||    
T  10583738 atgtagtactcttaatctggctggttgtatatgatttttgcattcaatgtaatctttagtttaaattcgttctta 10583812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 487
Target Start/End: Original strand, 25642189 - 25642242
Alignment:
Q  435 ggctattttgccaccga-gcattgaaagtcagttggtttaatggatcttgcatc 487  Q
    ||||| ||||||||||| |||| ||||||||||||||| ||||||||| |||||    
T  25642189 ggctagtttgccaccgatgcatggaaagtcagttggttcaatggatctcgcatc 25642242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 26280159 - 26280042
Alignment:
Q  152 ttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgt 250  Q
    |||||||||||| ||| || |||||||||||||||  ||||||| |||| || |||| |||||||||||||||||||||||||||| ||||||||| |||    
T  26280159 ttgggattagatgtaaatatctaggattctatgtattactcttaatctgactaattgcatatgatttatgcattcaatataatcttaggtttaaatctgt 26280060  T
Q  251 tcttacggcttttgccga 268  Q
    |||||  |||||||||||    
T  26280059 tcttaatgcttttgccga 26280042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 11917877 - 11917834
Alignment:
Q  203 gattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  11917877 gattgtatatgatttatgtattcaatataacctttggtttaaat 11917834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 40743469 - 40743563
Alignment:
Q  205 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttacggcttttgccgacgtgcaattcgtaaatgaacttttgatttag 299  Q
    ||||||||||| |||||||||||||||||||||| ||||||| | |  |||  ||||||| ||||| ||| | |||||| ||  |||||||||||    
T  40743469 ttgtatatgatctatgcattcaatataatctttgatttaaatatttatttaatgcttttgtcgacgagcactccgtaaacgatattttgatttag 40743563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 11910073 - 11910116
Alignment:
Q  203 gattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||    
T  11910073 gattgtatatgatttatgtattcaatataacctttgttttaaat 11910116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 39812749 - 39812859
Alignment:
Q  210 tatgatttatgcattcaatataatctttggtttaaatgtgttcttacggcttttgccgacgtgcaattcgtaaatgaacttttgatttagtttaagtaaa 309  Q
    ||||||||||| |||| || ||||||| || |||||| |||||| |  ||||||| |||||  || |||  |||||||||||| ||||||| | || ||     
T  39812749 tatgatttatgtattcgatgtaatcttcggattaaatatgttctcaatgcttttgtcgacgaacacttcacaaatgaacttttaatttagtatgagcaat 39812848  T
Q  310 gaattgcctta 320  Q
    |||||||||||    
T  39812849 gaattgcctta 39812859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 13002665 - 13002513
Alignment:
Q  149 gtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatg 247  Q
    ||||||||||||||| ||| || ||| |||||||||||  ||||||| | |||||  ||||||||||||||||||||||||||||||||||||||||||     
T  13002665 gtgttgggattagatgtaaatatctaagattctatgtattactcttaatttggctagttgtatatgatttatgcattcaatataatctttggtttaaata 13002566  T
Q  248 tgttcttacggcttttgccgacgtgcaattcgtaaatgaacttttgatttagt 300  Q
    | ||||||   |||||| ||||| ||| ||   |||||  |||||||||||||    
T  13002565 tattcttaatacttttgtcgacgagcacttaacaaatgctcttttgatttagt 13002513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 13077323 - 13077171
Alignment:
Q  149 gtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatg 247  Q
    ||||||||||||||| ||| || ||| |||||||||||  ||||||| | |||||  ||||||||||||||||||||||||||||||||||||||||||     
T  13077323 gtgttgggattagatgtaaatatctaagattctatgtattactcttaatttggctagttgtatatgatttatgcattcaatataatctttggtttaaata 13077224  T
Q  248 tgttcttacggcttttgccgacgtgcaattcgtaaatgaacttttgatttagt 300  Q
    | ||||||   |||||| ||||| ||| ||   |||||  |||||||||||||    
T  13077223 tattcttaatacttttgtcgacgagcacttaacaaatgttcttttgatttagt 13077171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 610 - 787
Target Start/End: Complemental strand, 16550808 - 16550631
Alignment:
Q  610 aactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaaacgatc-aa 708  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||| | |||||||||||| || ||| ||||||||| ||||||| | ||  ||| ||    
T  16550808 aactttctctaaacttgtcatattttacttgcgatcctgctaccaaaacaacttttacaaac-ttaatttagaatttctttgaattttagaaatatcaaa 16550710  T
Q  709 aactaagtctagtctttatggttcgatacaatttatttttgataaaaccgacacaatacttaatattgtatgaggatag 787  Q
    ||||| |   ||||| | ||||| ||||| |||||||| |||||||| | ||| |||||||| | ||||| ||||||||    
T  16550709 aactatgaggagtctctgtggtttgatacgatttatttatgataaaatcaacataatacttactgttgtacgaggatag 16550631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 46 - 328
Target Start/End: Complemental strand, 16551318 - 16551030
Alignment:
Q  46 caccataagaaagctagcgagcttggattcaagcttgttcatgcttctccaaca---accaacctttctttgttagttatgctctcactagctaactgaa 142  Q
    ||||||||||  ||||| ||| ||||||||||||||||| ||| ||||||||||   | ||| |||| ||||||||||||||||||  | | ||| ||||    
T  16551318 caccataagagggctagggagattggattcaagcttgttgatgtttctccaacatttatcaatctttatttgttagttatgctctctatgg-taaatgaa 16551220  T
Q  143 ctctctgtgttg---ggattagattta-atagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttg 238  Q
    |||| | | |||   ||||||||| || |||| |||| |||||||||| |||  || |||||||  ||||||||||||| ||||||||||||||| |||     
T  16551219 ctctattttttgttaggattagatgtagatagttagggttctatgtagaacttgtaatctggcttgttgtatatgatttttgcattcaatataatattta 16551120  T
Q  239 gtttaaatgtgttcttacggcttttgccgacgtgcaattcgtaaatgaacttttgatttagtttaagtaaagaattgccttaatatctaa 328  Q
    |||||||| | ||||||  |||| ||  |||| ||| |    ||||||| |||||||||||| | ||| |||||| | |||| |||||||    
T  16551119 gtttaaatctattcttaatgcttatgtggacgagcactctacaaatgaaattttgatttagtatgagtgaagaatcgacttattatctaa 16551030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 610 - 754
Target Start/End: Complemental strand, 13002211 - 13002070
Alignment:
Q  610 aactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaaacgatcaaa 709  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||| | | ||||||||| ||||||| ||||||||| | |||||||  |||||  ||    
T  13002211 aactttctc-aaacttatcatattttacttgtgatcctactaccaaaac-atttttacaaa-tttgatttagaatttctttaaatttaagtacgattgaa 13002115  T
Q  710 actaagtctagtctttatggttcgatacaatttatttttgataaa 754  Q
    ||||||   | ||| | ||||||||||||||||||||||||||||    
T  13002114 actaagcacaatctatgtggttcgatacaatttatttttgataaa 13002070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 610 - 754
Target Start/End: Complemental strand, 13076869 - 13076728
Alignment:
Q  610 aactttctctaaacttgtcatattttatttgtgatcctactaccaaatcgacttttacaaactttgattaagaatttctctgaatttaaaaacgatcaaa 709  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||| | | ||||||||| ||||||| ||||||||| | |||||||  |||||  ||    
T  13076869 aactttctc-aaacttatcatattttacttgtgatcctactaccaaaac-atttttacaaa-tttgatttagaatttctttaaatttaagtacgattgaa 13076773  T
Q  710 actaagtctagtctttatggttcgatacaatttatttttgataaa 754  Q
    ||||||   | ||  | ||||||||||||||||||||||||||||    
T  13076772 actaagcacaatcgatgtggttcgatacaatttatttttgataaa 13076728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 18220958 - 18220873
Alignment:
Q  170 gctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 255  Q
    ||||| ||||||||| | ||||||| | ||| || ||||||||||||||||||||||||||||| ||| |||||||| | ||||||    
T  18220958 gctagaattctatgtggtactcttaatttggttggttgtatatgatttatgcattcaatataatttttagtttaaatttattctta 18220873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 18476357 - 18476268
Alignment:
Q  166 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 255  Q
    ||||||||||| ||||||||   |||||| | | | || |||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  18476357 aatagctaggaatctatgtattgctcttaatattgatggttgtatatgatttacgcattcaatataatctttagtttaaatatgttctta 18476268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 2136587 - 2136520
Alignment:
Q  64 gagcttggattcaagcttgttcatgcttctccaaca---accaacctttctttgttagttatgctctc 128  Q
    ||||||||||||||||||||| ||| |||||||| |   | |||||||  ||||||||||||||||||    
T  2136587 gagcttggattcaagcttgttgatgtttctccaatatgtatcaaccttcttttgttagttatgctctc 2136520  T

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Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 32044576 - 32044681
Alignment:
Q  152 ttgggattagatttaa-tagctaggattcta-tgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtg 249  Q
    |||||||||||| ||| ||||||||||| || ||||  ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| || ||    
T  32044576 ttgggattagatgtaagtagctaggattttaatgtattactcttaatctagctgattgtatatgatttatgcattcaatataacctttggtttagatttg 32044675  T
Q  250 ttctta 255  Q
    ||||||    
T  32044676 ttctta 32044681  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 20618140 - 20618060
Alignment:
Q  166 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    ||||| ||||| ||||||||| ||||||| ||||| || |||||||||||||||| ||||||||||||||||  |||||||    
T  20618140 aatagataggaatctatgtagtactcttaatctggttggttgtatatgatttatggattcaatataatctttaatttaaat 20618060  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 662 - 753
Target Start/End: Original strand, 32268582 - 32268673
Alignment:
Q  662 ttttacaaactttgattaagaatttctctgaatttaaaaacgatcaaaactaagtctagtctttatggttcgatacaatttatttttgataa 753  Q
    |||||||||| || ||| |||||| || ||||||||| ||||||| ||||||||    |||||| ||| |||||||||||||||||||||||    
T  32268582 ttttacaaaccttaatttagaattcctgtgaatttaagaacgatcgaaactaagcgcggtctttgtggatcgatacaatttatttttgataa 32268673  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 19623639 - 19623714
Alignment:
Q  176 attctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgtt 251  Q
    |||||||| ||| |||||| | ||| || ||||||||||||||| |||||||| |||||||| |||||||| ||||    
T  19623639 attctatgcagcgctcttaatatggttggttgtatatgatttatccattcaatgtaatctttagtttaaatatgtt 19623714  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 8933978 - 8934049
Alignment:
Q  205 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttacggcttttgccgacgtgcaat 276  Q
    ||||||||||| ||||||||| |||| || |||||||||||| |||| |||  ||||||| ||| |||||||    
T  8933978 ttgtatatgatctatgcattctatatcatatttggtttaaatatgtttttaatgcttttgtcgatgtgcaat 8934049  T

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Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 27728435 - 27728301
Alignment:
Q  166 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttacggcttttgc 265  Q
    ||||| || |||||||| ||| ||| ||| |||  ||||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||  |||||| |    
T  27728435 aatagttaagattctatatagtacttttaatcttcctgattgcatatgatttatgcattcaatataaactttgatttaaatatgttcttaatgcttttac 27728336  T
Q  266 cgacgtgcaattcgtaaatgaacttttgatttagt 300  Q
    ||||| | | | || ||| ||||||||||||||||    
T  27728335 cgacgagaattccggaaaggaacttttgatttagt 27728301  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 148 - 299
Target Start/End: Original strand, 22116514 - 22116666
Alignment:
Q  148 tgtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    |||||||||||||||| ||| ||||||||  ||| || || | | ||| |||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  22116514 tgtgttgggattagatgtaaatagctaggcctctctgcagtatttttaatctggctagttgtatatgatttatgcattcaatataatccttggtttaaat 22116613  T
Q  247 gtgttcttacggcttttgccgacgtgcaattcgtaaatgaacttttgatttag 299  Q
       ||||||  ||||| ||  ||| ||| |||  |||||||||||| ||||||    
T  22116614 catttcttaatgctttagctaacgagcacttccaaaatgaactttttatttag 22116666  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 15583116 - 15583007
Alignment:
Q  148 tgtgttgggattagatttaa--tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaa 245  Q
    ||||||| |||||||| |||  ||||||| ||||| |||||  |||||| | ||| || |||||||||||||||| ||| |||||||||||| ||||||     
T  15583116 tgtgttgagattagatgtaagatagctagaattctttgtagtgctcttaatatgggtggttgtatatgatttatgtattaaatataatctttagtttaat 15583017  T
Q  246 tgtgttctta 255  Q
    | ||||||||    
T  15583016 tctgttctta 15583007  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 22116797 - 22116864
Alignment:
Q  436 gctattttgccaccgagcattgaaagtcagttggtttaatggatcttgcatcatcatccaggaatgga 503  Q
    |||||||| ||||||||| | || |||||||||||| ||||| ||| || || |||||||||||||||    
T  22116797 gctattttaccaccgagcgtcgagagtcagttggttcaatgggtctcgcgtcgtcatccaggaatgga 22116864  T

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Target: scaffold0149 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 32128 - 32029
Alignment:
Q  164 ttaatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttacggctttt 263  Q
    |||||||||||||||||||||| |||| ||  | ||| || |||| ||| ||||||| |||||||||||||||||||||||||  ||||||| |||||||    
T  32128 ttaatagctaggattctatgtaccactattcatgtggatggttgtctatcatttatgaattcaatataatctttggtttaaatccgttcttaaggctttt 32029  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 15549528 - 15549447
Alignment:
Q  165 taatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    |||||||||||| ||||||||| ||| ||| |||| ||  |||| |||||||||||||||||||||||| ||| ||||||||    
T  15549528 taatagctaggaatctatgtagtacttttaatctgactttttgtgtatgatttatgcattcaatataatttttagtttaaat 15549447  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 28609206 - 28609255
Alignment:
Q  205 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttctt 254  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  28609206 ttgtatatgatttatgcattcaatataatcttttgtttaaatttgttctt 28609255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 28608993 - 28609129
Alignment:
Q  46 caccataagaaagctagcgagcttggattcaagcttgttcatgcttctccaacaac---caacctttctttgttagttatgctctcactagctaactgaa 142  Q
    ||||||| || |||||| |||||||||||||||||| || |||||||||||||| |   |||||||   |||||||||||| |||   | | ||||| ||    
T  28608993 caccataggagagctagggagcttggattcaagctt-ttgatgcttctccaacatctttcaaccttctcttgttagttatgttctacatggataactaaa 28609091  T
Q  143 ctctc-tgtgttgggattagat-ttaatagctaggatt 178  Q
    ||||| |||||| ||||||||| | |||||||||||||    
T  28609092 ctctcttgtgttaggattagatgtaaatagctaggatt 28609129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 7395267 - 7395178
Alignment:
Q  166 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 255  Q
    ||||| ||||| ||||||||| | | ||| ||| |||  || |||| |||||||||||||||||||| |||| |||||||||||||||||    
T  7395267 aatagttaggaatctatgtagtaatattaatcttgcttgttatataagatttatgcattcaatataacctttagtttaaatgtgttctta 7395178  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 31611928 - 31611811
Alignment:
Q  148 tgtgttgggattagatttaa-tagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    |||||||||||||||| ||| ||||| |||||||||| || | |||||   |||||  || ||||||||| || ||||||||||||||||| |||||| |    
T  31611928 tgtgttgggattagatgtaaatagcttggattctatgcagtaatcttaacatggctagttatatatgattcatccattcaatataatctttagtttaact 31611829  T
Q  247 gtgttcttacggcttttg 264  Q
     ||||||||  |||||||    
T  31611828 ttgttcttaaagcttttg 31611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 19416416 - 19416366
Alignment:
Q  205 ttgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 255  Q
    |||||||||||||||| |||||||||||||||| ||||||||  |||||||    
T  19416416 ttgtatatgatttatgtattcaatataatctttagtttaaattcgttctta 19416366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 27128831 - 27128755
Alignment:
Q  178 tctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 255  Q
    ||||||||| ||| ||| ||| | || ||||||||||||||| ||||||||||||| ||| |||||||| ||||||||    
T  27128831 tctatgtagtactattaatcttgttggttgtatatgatttatacattcaatataat-tttagtttaaatatgttctta 27128755  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 29020840 - 29020652
Alignment:
Q  65 agcttggattcaagcttgttcatgcttctccaacaac---caacctttctttgttagt--tatgctctcactagctaactgaactctc---tgtgttggg 156  Q
    ||||||||  |||||||||||||||||||| |||| |   ||||||||||||||||||  |||||||||    | ||| | |||||||   ||||||| |    
T  29020840 agcttggagacaagcttgttcatgcttctcaaacatcaatcaacctttctttgttagtgttatgctctccacgggtaattaaactctcatttgtgttgag 29020741  T
Q  157 attagatttaa-tagctaggattct-atgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggttta 243  Q
    ||||||  ||| || || | ||||| ||||| |||||||||| ||  || |||||||||||||||| ||| |||||||||||| |||||    
T  29020740 attagaggtaaatatctcgaattctgatgtatcactcttagtttgtttggttgtatatgatttatgtatttaatataatctttagttta 29020652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 770
Target Start/End: Complemental strand, 31611364 - 31611321
Alignment:
Q  727 tggttcgatacaatttatttttgataaaaccgacacaatactta 770  Q
    |||||||||||| ||||||||||||||||||| || ||||||||    
T  31611364 tggttcgatacattttatttttgataaaaccggcataatactta 31611321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 2845 - 2934
Alignment:
Q  166 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttctta 255  Q
    |||| ||| |||| ||||||| || |||| ||||| |  |||||||||||||||||| | ||||||||||||  ||||||| ||||||||    
T  2845 aatatctatgattatatgtagtacgcttaatctggattgttgtatatgatttatgcaattaatataatcttttatttaaatttgttctta 2934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 18583 - 18518
Alignment:
Q  181 atgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaat 246  Q
    |||||| ||||||| |||||||| || || |||||||||||||||||| |||| ||| ||||||||    
T  18583 atgtagtactcttaatctggctggttatacatgatttatgcattcaatttaatatttagtttaaat 18518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 9629 - 9683
Alignment:
Q  166 aatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatg 220  Q
    |||||||| || ||||||||  ||||||||||| |||| ||||||||||||||||    
T  9629 aatagctacgaatctatgtaatactcttagtctcgctgtttgtatatgatttatg 9683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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