View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10054_low_2 (Length: 690)

Name: NF10054_low_2
Description: NF10054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10054_low_2
NF10054_low_2
[»] chr2 (1 HSPs)
chr2 (11-674)||(41467723-41468392)


Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 11 - 674
Target Start/End: Complemental strand, 41468392 - 41467723
Alignment:
Q  11 caaaggaaagcaagtaatgtcaggtgtatgggtatttgacaagaaaggtgtggtgaggttaataaccaacccaacaagagaatcctttgagcacaagaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41468392 caaaggaaagcaagtaatgtcaggtgtatgggtatttgacaagaaaggtgtggtgaggttaataaccaacccaacaagagaatccttcgagcacaagaca 41468293  T
Q  111 gaaccaggaacaggaacagcaacagcaccaggtgcaagaccaagaattcttgtatatcttccaacaaaccaagtcattcattccttctctcaacttgagc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41468292 gaaccaggaacaggaacagcaacagcaccaggtgcaagaccaagagttcttgtatatcttccaacaaaccaagtcattcattccttctctcaacttgagc 41468193  T
Q  211 aacgactcactgaacttggttggactcgttactctcactctcatcttccagaccacatccagtttcatcgttcagacacatctccacaccttctatcact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41468192 aacgactcactgaacttggttggactcgttactctcactctcatcttccagaccacatccagtttcatcgttcagacacatctccacaccttctatcact 41468093  T
Q  311 cccaagaaacttcagtagttttaagcactttcatatgtacgacattgttattcaaaaccgttcnnnnnnncaagttcgtgaccctacttcttagttctta 410  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  41468092 cccaagaaacttcaatagttttaagcactttcatatgtacgacattgttattcaaaaccgttctttttttcaagttcgtgaccctacttcttagttctta 41467993  T
Q  411 ctactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgtgcattgttagttagctaggnnnnnnnttcctcttgccctatgttcctg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  41467992 ctactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgtgcattgttagttagctaggaaaaaaattcctcttgccctatgttcctg 41467893  T
Q  511 ccctagc----nnnnnnnnnnnnnnnnacatgcata--ttttgatgaacaagtagtacatgaattatcgatccctctgttaatgatatcacaatcattga 604  Q
    |||||||                    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41467892 ccctagctatatacatagacatatataacatgcatattttttgatgaacaagtagtacatgaattatcgatccctctgttaatgatatcacgatcattga 41467793  T
Q  605 gtaatttctttgttggtagtggtaattagctttttaattagtattttttcagtttaggttaaaatatttt 674  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  41467792 gtaatttctttgttggtagtggtaattagctttttaattaatattttttcagtttaggtttaaatatttt 41467723  T

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