View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10054_low_3 (Length: 391)
Name: NF10054_low_3
Description: NF10054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10054_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 28846934 - 28846637
Alignment:
| Q |
15 |
gacatcaatgatgaagagaaaagtaatgatgccgctactgaacaaaataaattgaattttgatttgaatgagtcatatcttgtgtaggagtaagctgtct |
114 |
Q |
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| T |
28846934 |
gacaacaatgatgaagagaaaagtaatgatgccgctactgaacaaaataaattgaattttgatttgaatgattcatatcttgtggaggagtaagcaatct |
28846835 |
T |
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| Q |
115 |
atttaggttgataagacaatattatatggtttatgcnnnnnnnnnnnnat-gttaaaccatcagtacttagataagttagagcaactccaatgcatgttc |
213 |
Q |
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| T |
28846834 |
atttaggttgataagacaatattatatggtttatgcttcttttttttttttgttaaaccatcaattcttagataagttagagcaactcaaatgcatgttc |
28846735 |
T |
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| Q |
214 |
tacacacccaaaaactgttcttgttattttttagcattggagaacatccacttggcatccaaggtggagaatggttgcaccacaagaactggttctac |
311 |
Q |
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| T |
28846734 |
tacacacccaaaaactgttcttgttattttttcgcatcggagaacatccacttggtatccaaggtggagaatggttgcaccacaagaactggttctac |
28846637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 28846636 - 28846600
Alignment:
| Q |
339 |
cagcagaacatgaaaaagccaaagttcatttgcaaat |
375 |
Q |
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| T |
28846636 |
cagcagaacatggaaaagccaaagctcatttgcaaat |
28846600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 190 - 329
Target Start/End: Complemental strand, 190764 - 190625
Alignment:
| Q |
190 |
ttagagcaactccaatgcatgttctacacacccaaaaactgttcttgttattttttagcattggagaacatccacttggcatccaaggtggagaatggtt |
289 |
Q |
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| T |
190764 |
ttagagcaacttcaatgcatgttttacacacccaaaaactgtttttgatattttttagcattggagaacatccacttgtcattcaaggtggagaacggtt |
190665 |
T |
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| Q |
290 |
gcaccacaagaactggttctacatgacaaaatgttgtttt |
329 |
Q |
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| T |
190664 |
gtaccataagaactggttctacataacaaaaagctgtttt |
190625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 7578572 - 7578463
Alignment:
| Q |
217 |
acacccaaaaactgttcttgttatttttt-agcattggagaacatccacttggcatccaaggtggagaatggttgcaccacaagaactggttctacatga |
315 |
Q |
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| T |
7578572 |
acactcaaaatctgttcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcaccacaagaacatgttctacataa |
7578473 |
T |
|
| Q |
316 |
caaaatgttg |
325 |
Q |
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||||| |||| |
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| T |
7578472 |
caaaaagttg |
7578463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 3812226 - 3812317
Alignment:
| Q |
208 |
atgttctacacacccaaaaactgttcttgttattttttagcattggagaacatccacttggcatccaaggtggagaatggttgcaccacaagaac |
302 |
Q |
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| T |
3812226 |
atgtactacacgcccaaaaact---cttgttatgttttagcattggagaacatccacttgtcatttaaggtggagaacggttgcaccacaagaac |
3812317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 21183830 - 21183728
Alignment:
| Q |
211 |
ttctacacacccaaaaactgttcttgttattttttagcattggagaacatccacttggcatccaaggtggagaatggttgcaccacaagaactggttcta |
310 |
Q |
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| T |
21183830 |
ttctacacacctaaaaactgttcttgttattttttagcattggagaacatccacttgtcatccaaggtggagaacggttgcaccacaagaaccggttcta |
21183731 |
T |
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| Q |
311 |
cat |
313 |
Q |
| |
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||| |
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| T |
21183730 |
cat |
21183728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 208 - 347
Target Start/End: Complemental strand, 37731293 - 37731152
Alignment:
| Q |
208 |
atgttctacacacccaaaaactgttcttgttattttttagcattggagaacatccacttggcatccaaggtggagaatggttgcaccacaagaactggtt |
307 |
Q |
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| T |
37731293 |
atgttctacacacccaaaaattgttcttgttattttttagtatcggagaacatccacttgtcatccaaggtggagaacagttgcaccacaagaaccggtt |
37731194 |
T |
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| Q |
308 |
ctacatgacaaaatgttgttttttgt--acggacagcagaac |
347 |
Q |
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| T |
37731193 |
ctacataaccaaaagctgctttttatagacggacagcagaac |
37731152 |
T |
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