View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10054_low_4 (Length: 252)
Name: NF10054_low_4
Description: NF10054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10054_low_4 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 25442666 - 25442427
Alignment:
| Q |
13 |
caaaggcatcctcatacgctccacttatttttcttacatgagatggatcaatgtcatagaagacaggaaaaacaacttgtttcaatctactaccggattc |
112 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
25442666 |
caaaggcatcctcatacgctccagatctttttcttacatgagatggatcaatgtcatagaagacaggaaaaacaacttgtttcaatcttctactggattc |
25442567 |
T |
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| Q |
113 |
atcaatagcagccatttcatccaaacaccatgttgatgaagcgtaatcttttgagaagacaacgatagaaagcctcgaatctttaattgcctgcagaagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
25442566 |
atcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagt |
25442467 |
T |
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| Q |
213 |
tggggtgaaatggattcgcctttctgaagcgatttgtcat |
252 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |
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| T |
25442466 |
tggagtgaaatggattcgcctttctgaagcgatttgtcat |
25442427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 25636858 - 25636619
Alignment:
| Q |
13 |
caaaggcatcctcatacgctccacttatttttcttacatgagatggatcaatgtcatagaagacaggaaaaacaacttgtttcaatctactaccggattc |
112 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |
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| T |
25636858 |
caaaggcatcctcatacgctccagatctttttcttacatgagatggatcaatgtcatagaagacaggaaaaacaactagtttcaatcttctactggattc |
25636759 |
T |
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| Q |
113 |
atcaatagcagccatttcatccaaacaccatgttgatgaagcgtaatcttttgagaagacaacgatagaaagcctcgaatctttaattgcctgcagaagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
25636758 |
atcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagt |
25636659 |
T |
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| Q |
213 |
tggggtgaaatggattcgcctttctgaagcgatttgtcat |
252 |
Q |
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| T |
25636658 |
tggagtgaaatggattcgcctttctgaagcgatttgtcat |
25636619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 25436222 - 25436444
Alignment:
| Q |
13 |
caaaggcatcctcatacgctccacttatttttcttacatgagatggatcaatgtcatagaagacaggaaaaacaacttgtttcaatctactaccggattc |
112 |
Q |
| |
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|||| |||| ||||||| ||||| || ||||| |||||||||||||| | ||||| || ||||| || ||||||||||||||| | | | ||||| |
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| T |
25436222 |
caaatgcattctcatacactccattttgttttcgaacatgagatggatcgacatcataaaaaacagggaatacaacttgtttcaatttttttctagattc |
25436321 |
T |
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| Q |
113 |
atcaatagcagccatttcatccaaacaccatgttgatgaagcgtaatcttttgagaagacaacgatagaaagcctcgaatctttaattgcctgcagaagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |||| ||| || || | |||||| || |||||| |
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| T |
25436322 |
atcaatagcagccatttcatccaaacaccatgttgatgaagcataatctcttgagaaaacaatgatacaaacccgtgaccgtcgaattgcttgtagaagt |
25436421 |
T |
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| Q |
213 |
tggggtgaaatggattcgccttt |
235 |
Q |
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||||||||||||| ||| ||||| |
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| T |
25436422 |
tggggtgaaatggcttctccttt |
25436444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 25484582 - 25484392
Alignment:
| Q |
48 |
acatgagatggatcaatgtcatagaagacaggaaaaacaacttgtttcaatctactaccggattcatcaatagcagccatttcatccaaacaccatgttg |
147 |
Q |
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|||||||||||||||| ||||| || ||||| ||||||||||||||||| | | | ||||| |||||||||||||||||||||||||||||||| |
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| T |
25484582 |
acatgagatggatcaacatcataaaaaacagggaaaacaacttgtttcaaatttattctagattcgctaatagcagccatttcatccaaacaccatgttg |
25484483 |
T |
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| Q |
148 |
atgaagcgtaatcttttgagaagacaacgatagaaagcctcgaatctttaattgcctgcagaagttggggtgaaatggattcgcctttctg |
238 |
Q |
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| ||||| |||||||| ||||| ||||||||||||| | || | || |||||| || ||||||||||||||||||| ||| |||||||| |
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| T |
25484482 |
aagaagcataatctttggagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctg |
25484392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 25478806 - 25478928
Alignment:
| Q |
115 |
caatagcagccatttcatccaaacaccatgttgatgaagcgtaatcttttgagaagacaacgatagaaagcctcgaatctttaattgcctgcagaagttg |
214 |
Q |
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||||| ||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||| |||||||| | ||| | || ||||||||| ||||||| |
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| T |
25478806 |
caataacagtcatttcatccaaacaccaagttgagccagcataatcttctgagaagacaactatagaaagacgcgattgttgaattgcctgtcgaagttg |
25478905 |
T |
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| Q |
215 |
gggtgaaatggattcgcctttct |
237 |
Q |
| |
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| ||||||||||||| ||||||| |
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| T |
25478906 |
gagtgaaatggattcccctttct |
25478928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 500196 - 500243
Alignment:
| Q |
122 |
agccatttcatccaaacaccatgttgatgaagcgtaatcttttgagaa |
169 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
500196 |
agccatttcatccaaacaccatgttgatgaagcataatcttttgagaa |
500243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 35105788 - 35105982
Alignment:
| Q |
48 |
acatgagatggatcaatgtcatagaagacaggaaaaacaacttgtttcaatctactaccggattcatcaatagcagccatttcatccaaacaccatgttg |
147 |
Q |
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|||||||||||||||| ||||| || ||||| |||||| |||||||||||| ||| | ||||| ||| || |||||| || |||||||||||||||| |
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| T |
35105788 |
acatgagatggatcaacatcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttg |
35105887 |
T |
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| Q |
148 |
atgaagcgtaatcttt-tgagaagacaacgatagaaagcctcgaatctttaattgcctgcagaagttggggtgaaatggattcgcctttctgaagc |
242 |
Q |
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| || | |||||| ||||||||||| ||||||| || |||| || |||||| || |||||||| || |||| |||||| ||||||| |||| |
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| T |
35105888 |
actcggcat-atctttcagagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagc |
35105982 |
T |
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