View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10055_high_4 (Length: 416)
Name: NF10055_high_4
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10055_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 2 - 400
Target Start/End: Original strand, 4498527 - 4498925
Alignment:
| Q |
2 |
caacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttagctatgcatgtaatccttagctatgtgctcctcctgtgatgaac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498527 |
caacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttagctatgcatgtaatccttagctatgtgctcctcctgtgatgaac |
4498626 |
T |
|
| Q |
102 |
aattgtaccaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttggatttgcag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498627 |
aattgtaccaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacatcagatttctacataggaatgggagttggatttgcag |
4498726 |
T |
|
| Q |
202 |
cagggttttggggggtttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatac |
301 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498727 |
cagggttttggggggtttgcattgctactttcttgatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatac |
4498826 |
T |
|
| Q |
302 |
ctttgtctttatctgtcaagagggacgaaaatgtgggaattggaccatcccgctgctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498827 |
ctttgtctttatctgtcaagagggatgaaaatgtgggaattggaccataccgccgctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
4498925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 4329382 - 4329074
Alignment:
| Q |
2 |
caacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttagctatgcatgtaatccttagctatgtgctcctcctgtgatgaac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
4329382 |
caacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttaactatgcaggtaatcctcagctttgtggtcctcctgtgatgaat |
4329283 |
T |
|
| Q |
102 |
aattgtaccaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttggatttgcag |
201 |
Q |
| |
|
|||||||| ||| | ||||||||||||||| |||||||||| ||||| |||||| | |||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
4329282 |
aattgtacaaaaatgaaacaagttttggagcgtggaaattctgatgctggtttcgttgacacatcagatttctacgtaggaatgggagttggatttgcag |
4329183 |
T |
|
| Q |
202 |
cagggttttggggggtttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4329182 |
cagggttttggggggtttgcattgctattttctttaacagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgagac |
4329083 |
T |
|
| Q |
302 |
ctttgtctt |
310 |
Q |
| |
|
||||||||| |
|
|
| T |
4329082 |
ctttgtctt |
4329074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 4329036 - 4328946
Alignment:
| Q |
314 |
ctgtcaagagggacgaaaatgtgggaattggaccatcccgctg----ctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
400 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4329036 |
ctgtcaagagggatgaaaatgtggaaattggaccataccgcacgccactaggagtctggtcgatattgaagttgcattgaagtctcatatt |
4328946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University