View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10055_high_5 (Length: 313)

Name: NF10055_high_5
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10055_high_5
NF10055_high_5
[»] chr5 (1 HSPs)
chr5 (17-303)||(28319253-28319545)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 28319253 - 28319545
Alignment:
Q  17 aaaagctagtctcttgtaatgtcgagagaaatgttaaaaacttgtaccaaataatcaaataaagatatgaagtaacttaca------cactgggcacagt 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||    
T  28319253 aaaagctagtctcctgtaatgtcgagagaaatgttaaaaacttgtaccaaataatcaaataaagatatgaagtaacttacataggtacactgggcacagt 28319352  T
Q  111 aatagtaatttggcttaataacaaacttcaactttagtaaaattaattcgaaattgcattgtcaccatcccaccacctaagttgtatagttcttttcttc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28319353 aatagtaatttggcttaataacaaacttcaactttagtaaaattaattcgaaattgcattgtcaccatcccaccacctaagttgtatagttcttttcttc 28319452  T
Q  211 atctttattgttctttgattttgtgtttatattcaacaaatttgtccagtcaaaatacaataaaaggtaaacttgctcatcaaaatacctatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28319453 atctttattgttctttgattttgtgtttatattcaacaaatttgtccagtcaaaatacaataaaaggtaaacttgctcatcaaaatacctatg 28319545  T

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