View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10055_high_8 (Length: 291)
Name: NF10055_high_8
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10055_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 30621235 - 30621380
Alignment:
| Q |
1 |
caagttcatagaggccatatgatttttgtgaaagnnnnnnn--gacaaagagagatcggtgagaaagaaaactaaagtgtagactagaggttaaaataga |
98 |
Q |
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| T |
30621235 |
caagttcatagaggccatatgatttttgtgaaagaaaaaaaaagacaaagagagatcggtgagaaagaaaactaaagtgtagactagaggttaaaataga |
30621334 |
T |
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| Q |
99 |
agtggtttgtgatatgcatgaagtggaggaggtagcacaagttatg |
144 |
Q |
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| T |
30621335 |
agtggtttgtgatatgcatgaagtggaggaggtagcacaagttatg |
30621380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 30621479 - 30621508
Alignment:
| Q |
243 |
catttatagtatacttaacacatatacata |
272 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30621479 |
catttatagtatacttaacacatatacata |
30621508 |
T |
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