View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10055_high_9 (Length: 240)
Name: NF10055_high_9
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10055_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 32780064 - 32780287
Alignment:
| Q |
18 |
gatacctacatttctatatccacaattttgatactccagtttttaaaatgtctaacatttnnnnnnn-tatgcatttggggctgaattttcacgatgtag |
116 |
Q |
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| T |
32780064 |
gatacctacatttctatatccacaattttgatactccagtttttaaaatgtctaacattttccccacctatgcatttggggctgaattttcacgatttgg |
32780163 |
T |
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| Q |
117 |
caagtgagatgcttatgtgacaattgagttaatgacatagatataggttgttaagtgataatccacctagacaatgtcttgcatcaaatttggttgttct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32780164 |
caagtgagatgcttatgtgacaattgagttaatgacatagatataagttgttaactgataatccacctagacaatgtcttgcatcaaatttagttgttct |
32780263 |
T |
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| Q |
217 |
acagatttatgtatattttgctga |
240 |
Q |
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| T |
32780264 |
actgatttatgtatattttgctga |
32780287 |
T |
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