View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10055_low_2 (Length: 494)
Name: NF10055_low_2
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10055_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 34683079 - 34683543
Alignment:
| Q |
11 |
caaagggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgacaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683079 |
caaagggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgacaat |
34683178 |
T |
|
| Q |
111 |
gacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtttgctcaatgttcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683179 |
gacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaaccaaaaacgcccacaaatatggtagcattcagtttgctcaatgttcaa |
34683278 |
T |
|
| Q |
211 |
cattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattcaatctttaaacgttg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34683279 |
cattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattcaatctttaaaagttg |
34683378 |
T |
|
| Q |
311 |
atcgtttttggtccacgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaagaaggttgccgaggaagg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683379 |
atcgtttttggtccacgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaagaaggttgccgaggaagg |
34683478 |
T |
|
| Q |
411 |
tcctacacctagaggccattcaacaccaccatcaaaatatctcagatctgacgggatgtcaacgg |
475 |
Q |
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| T |
34683479 |
tcctacacctagaggccattcaacaccaccatcaaaatatctcagatctgacgggatgtcaacgg |
34683543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 26980698 - 26980882
Alignment:
| Q |
13 |
aagggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgac---aa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |
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| T |
26980698 |
aagggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcacaaccatttgagtctt-atgaggctttgatgacgacaa |
26980796 |
T |
|
| Q |
110 |
tgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagt |
195 |
Q |
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| T |
26980797 |
tgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttattgggcgaaccaaaaacgcccacaaatatggtagcattcagt |
26980882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 326 - 457
Target Start/End: Original strand, 26981067 - 26981198
Alignment:
| Q |
326 |
cgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaagaaggttgccgaggaaggtcctacacctagagg |
425 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
26981067 |
cgatgcttacaaatacaaatttaagtattgagtgtgttcgcaaatactattccttgccgtcaaagaagaagattgccgacgaaggtcctacacctagagg |
26981166 |
T |
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| Q |
426 |
ccattcaacaccaccatcaaaatatctcagat |
457 |
Q |
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| T |
26981167 |
ccattcaacaccaccatcaaaatatctcagat |
26981198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 31 - 313
Target Start/End: Complemental strand, 27084221 - 27083941
Alignment:
| Q |
31 |
ttttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgacaatgacagtgtcgaaggcagtgt |
130 |
Q |
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|||||||||| ||||| ||| |||||| ||||| ||||| ||||||||||| |||| |||||| || |||||||||||||| ||| | |||||| |||| |
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| T |
27084221 |
ttttagaaaccagaagtcgtccgaagaagaaatggaaaatgtcgcaaccattcgagt-tttatgcggttttgatgacaatgatagtatagaaggcggtgt |
27084123 |
T |
|
| Q |
131 |
catccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtttgctcaatgttcaacattaaagcttcgtagagtg |
230 |
Q |
| |
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||| |||||||||||||| |||||||||||| || ||||||||| |||||| |||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
27084122 |
catgaaccgtaaatggaaacctcttgggcgaaccaacggcgcccacaattatggtctcattaagtttgttcaatgttcaacattaaagcttcctagagta |
27084023 |
T |
|
| Q |
231 |
agggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattcaatctttaaacgttgatc |
313 |
Q |
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||||||||| ||| ||| |||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||| |
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| T |
27084022 |
agggtgaaa-atcaataatgataagttaagtctttgaatttgagcagtaaattgtaaaacaattcaatctttaaacattgatc |
27083941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 27022203 - 27022332
Alignment:
| Q |
190 |
ttcagtttgctcaatgttcaacattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaat |
289 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||| |||| |
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| T |
27022203 |
ttcagtttgttcaatgttcaacattaaagcttcctagagtgagggtcaaagttaacgaaagatatgttaagtctttgaatttcagccgtaaattggaaat |
27022302 |
T |
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| Q |
290 |
caattcaatctttaaacgttgatcgttttt |
319 |
Q |
| |
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| || |||||||||||| ||||||| |||| |
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| T |
27022303 |
cgatccaatctttaaacattgatcgctttt |
27022332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 452
Target Start/End: Original strand, 27022623 - 27022697
Alignment:
| Q |
377 |
cctcgccgtcaaagaagaaggttgccgaggaaggtcctacacctagaggccattcaacaccaccatcaaaatatct |
452 |
Q |
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||||||||||||||||||||||| | | ||||| || |||| ||||||||||||||||||||||| ||| |||| |
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| T |
27022623 |
cctcgccgtcaaagaagaaggtttgcaacgaaggccc-acactcagaggccattcaacaccaccatccaaagatct |
27022697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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