View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10055_low_3 (Length: 427)
Name: NF10055_low_3
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10055_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 3271068 - 3270897
Alignment:
| Q |
38 |
atagacccgtcctaaaatccatattatttgaaataaaagatccaatattatagactcctaatacgaaatgcggcatattatttttcattaatatttagat |
137 |
Q |
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| T |
3271068 |
atagagccgtcctaaaatccatattatttgaaataaaagatccaacattatagactcctaatacgaaatgcggcatattatttttcattaatatttagat |
3270969 |
T |
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| Q |
138 |
aacactattgtattgtggtataatacaatggttattggtagagcttttaaaacggactgctcgacccgttta |
209 |
Q |
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| T |
3270968 |
aacactattgtgttgtggtataatacaatgtctattggtagagctttcaaaacggactgctcaacccgttta |
3270897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 206 - 386
Target Start/End: Complemental strand, 3270605 - 3270423
Alignment:
| Q |
206 |
tttaggaccgaccctaacggactttgggttttatcggatcgggttaaaagccttgttttaaaatgggctctaaaaatactacatgagcccgaccctatac |
305 |
Q |
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| T |
3270605 |
tttaggacctaccctaacaggctttgggttttaacgggtcgggttaaaagccttgttttaaaacgggctctaaaaatactacctgagcccgaccctatac |
3270506 |
T |
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| Q |
306 |
gggttgtaggctaaacgggtcagtccgtcatatatttaaaacaa--aatattgtttcctctaataacaagaaaaccaattata |
386 |
Q |
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| T |
3270505 |
gggttgtaggctaaacggatcagtccgtcatatatttaaaaaaaataaaattatttcctctagtaacaagaaaaccaattata |
3270423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 17017115 - 17017049
Alignment:
| Q |
176 |
tagagcttttaaaacggactgctcgacccgtttaggaccgaccctaacggactttgggttttatcgg |
242 |
Q |
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| T |
17017115 |
tagagctgtcaaaacggacggcccgacccgtttaggtccggccctaacgggcttcgggttttatcgg |
17017049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 27415655 - 27415583
Alignment:
| Q |
176 |
tagagcttttaaaacggactgctcgacccgtttaggaccgaccctaacggactttgggttttatcggatcggg |
248 |
Q |
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| T |
27415655 |
tagagctgtcaaaacggacggtccgacccgtttaggaccgggcctaacgggcttcgggttttagcggatcggg |
27415583 |
T |
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