View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10055_low_5 (Length: 313)

Name: NF10055_low_5
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10055_low_5
NF10055_low_5
[»] chr5 (1 HSPs)
chr5 (17-303)||(28319253-28319545)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 28319253 - 28319545
Alignment:
Q  17 aaaagctagtctcttgtaatgtcgagagaaatgttaaaaacttgtaccaaataatcaaataaagatatgaagtaacttaca------cactgggcacagt 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||    
T  28319253 aaaagctagtctcctgtaatgtcgagagaaatgttaaaaacttgtaccaaataatcaaataaagatatgaagtaacttacataggtacactgggcacagt 28319352  T
Q  111 aatagtaatttggcttaataacaaacttcaactttagtaaaattaattcgaaattgcattgtcaccatcccaccacctaagttgtatagttcttttcttc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28319353 aatagtaatttggcttaataacaaacttcaactttagtaaaattaattcgaaattgcattgtcaccatcccaccacctaagttgtatagttcttttcttc 28319452  T
Q  211 atctttattgttctttgattttgtgtttatattcaacaaatttgtccagtcaaaatacaataaaaggtaaacttgctcatcaaaatacctatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28319453 atctttattgttctttgattttgtgtttatattcaacaaatttgtccagtcaaaatacaataaaaggtaaacttgctcatcaaaatacctatg 28319545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University