View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10055_low_6 (Length: 311)
Name: NF10055_low_6
Description: NF10055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10055_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 54263329 - 54263048
Alignment:
| Q |
19 |
gactctatcaccacagccacctacacaatttagctaatctccgcttaggattcctcttctagataaattatctttgattggaatacggttttgaaatact |
118 |
Q |
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| T |
54263329 |
gactctatcaccacagccacctacacaatttagctaatctccgcttaggattactcttctagataaattatctttgattggaatacggttttgaaatact |
54263230 |
T |
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| Q |
119 |
tggcacacaaacaccacaactttcaacagaatgaatttatgctacgccttattgttgagtggttgatccaggattgctatcttccattaagacattgtaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263229 |
tggcacacaaacaccacaactttcaacagaatgaatttatgctacgccttattgttgagtggttgatccaggattgctatcttccattaagacattgtaa |
54263130 |
T |
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| Q |
219 |
gccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataaccttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263129 |
gccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataaccttt |
54263048 |
T |
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