View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10056_high_10 (Length: 358)
Name: NF10056_high_10
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 42875568 - 42875233
Alignment:
| Q |
7 |
gaagcaaaggacatagaaagggaattgcaattatgtacaaaagtaaaaattttgttgattggtttgaagccaaacatcctttacattcagctgaaggaac |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875568 |
gaagcaaagtacatagaaagggaattgcaattatgtacaaaagtaaaaattttgttgattggtttgaagccaaacatcctttacattcagctgaaggaac |
42875469 |
T |
|
| Q |
107 |
aggaatgtgggagtgtcctgannnnnnnccagtattaaataagaatccattaaccattggtcttgatacatctgtgaatggtgatgatgttagacatgtg |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875468 |
aggaatgtgggagtgtcctgatttttttccagtattaaataagaatccattaaccattggtcttgatacatctgtgaatggtgatgatgttagacatgtg |
42875369 |
T |
|
| Q |
207 |
cttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttatgatactgttaaggatgtctttgttccagataatggctttgagaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875368 |
cttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttatgatactgttaaggatgtctttgttccagataatggctttgagaata |
42875269 |
T |
|
| Q |
307 |
atcaaaatgtgttgagatatgattatgggaaatatt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875268 |
atcaaaatgtgttgagatatgattatgggaaatatt |
42875233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 5902788 - 5902889
Alignment:
| Q |
26 |
gggaattgcaattatgtacaaaagtaaaaattttgttgattggtttgaagccaaacatcctttacattcagctgaaggaacaggaatgtgggagtgtcct |
125 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||| || ||||| || || | ||||| ||||| ||||||||| |||| || |||||||||||||||||| |
|
|
| T |
5902788 |
gggaattgcaattttgtataagagtaaagattttattaattggattaaatcaaaacaccctttgcattcagctaaaggcactggaatgtgggagtgtcct |
5902887 |
T |
|
| Q |
126 |
ga |
127 |
Q |
| |
|
|| |
|
|
| T |
5902888 |
ga |
5902889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 5902943 - 5903016
Alignment:
| Q |
187 |
gtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttat |
260 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||||||||| | |||||||||| | ||| | |||||||||||| |
|
|
| T |
5902943 |
gtgacgatgttaggcatgtattgaaggttagtttggatgataaaaaacatgattattatctcattgggacttat |
5903016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University