View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_high_19 (Length: 253)
Name: NF10056_high_19
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29015650 - 29015892
Alignment:
| Q |
1 |
tgacaaatgcatatatttcagttcctctgatagaaaaaatttcctagatggtaacatagagaaacagttatataagcacttggaagtaacatataagttg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29015650 |
tgacaaatgcgtatatttcagttcctctgatagaaaaaatttcctagatggtaacatagagaaacagttatataagcacttggaagtaacatataagttg |
29015749 |
T |
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| Q |
101 |
acaaattaatgtagcaactaggttaatgttttatgcgtttaccagcaatgtcactttgatttaatgctttaagagctgcatctgctgctctaacatcata |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29015750 |
acaaattaatgtagcatctaggttaatgttttatgcgtttaccagaaatgtcactttgatttaatgctttaagagctgcatctgctgctctaacatcata |
29015849 |
T |
|
| Q |
201 |
aaattcaatgaatttatggtctctcttgtttggtgattctctg |
243 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29015850 |
aaattcaatgaatttatggtctctcttgtttggtgtttctctg |
29015892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 24086025 - 24086266
Alignment:
| Q |
1 |
tgacaaatgcatatatttcagttcctctgatagaaaaaatttcctagatggtaacatagagaaacagttatataagcacttggaagtaacatataagttg |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
24086025 |
tgacaaatgcat-tatttcagttcctctgatagaaaacgtttcctatatgataacatagagaaacaattatataagcatttggaagtaagatataagttg |
24086123 |
T |
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| Q |
101 |
acaaattaatgtagcaactaggttaatgttttatgcgtttaccagcaatgtcactttgatttaatgctttaagagctgcatctgctgctctaacatcata |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
24086124 |
acaaattaatgtagcatctaggttaatgttttatgcgtttaccagcaatgtcactttgatttaattctttaacagctgcatctgctgctctaacatcata |
24086223 |
T |
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| Q |
201 |
aaattcaatgaatttatggtctctcttgtttggtgattctctg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24086224 |
aaattcaatgaatttatggtctctcttgtttggtgattctctg |
24086266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 16168236 - 16168345
Alignment:
| Q |
118 |
ctaggttaatgttttatgcgtttaccagcaatgtcactttgatttaatgctttaagagctgcatctgctgctctaacatcataaaattcaatgaatttat |
217 |
Q |
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||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16168236 |
ctaggttcaagttttatgcgtttgccagcaatgtcacttcgatttaatgctttaagagctgcatctgctgctctaacatcataaaattcaataaatttat |
16168335 |
T |
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| Q |
218 |
ggtctctctt |
227 |
Q |
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||| |||||| |
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| T |
16168336 |
ggtgtctctt |
16168345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 21880662 - 21880750
Alignment:
| Q |
130 |
tttatgcgtttaccagcaatgtcactttgatttaatgctttaagagctgcatctgctgctctaacatcataaaattcaatgaatttatg |
218 |
Q |
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||||||||||||||||| |||||||| |||||||| |||||| ||||| ||||| ||||| |||||||| ||||||| || ||||| |
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| T |
21880662 |
tttatgcgtttaccagctatgtcactcctatttaatgatttaagtgctgcttctgcagctcttacatcatagtattcaataaacttatg |
21880750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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