View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10056_high_20 (Length: 250)

Name: NF10056_high_20
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10056_high_20
NF10056_high_20
[»] chr5 (6 HSPs)
chr5 (1-239)||(41108971-41109209)
chr5 (38-239)||(18691030-18691231)
chr5 (39-235)||(33215070-33215264)
chr5 (38-141)||(41109725-41109828)
chr5 (170-206)||(22726498-22726534)
chr5 (165-202)||(33214546-33214583)
[»] chr1 (8 HSPs)
chr1 (38-239)||(11359324-11359525)
chr1 (42-235)||(5721850-5722042)
chr1 (165-201)||(52975688-52975724)
chr1 (169-205)||(1280528-1280564)
chr1 (157-207)||(35764138-35764188)
chr1 (169-202)||(49105523-49105556)
chr1 (169-201)||(17508545-17508577)
chr1 (165-201)||(43904365-43904401)
[»] chr2 (6 HSPs)
chr2 (42-235)||(39814530-39814722)
chr2 (49-230)||(12987338-12987525)
chr2 (158-206)||(25059704-25059752)
chr2 (158-206)||(25064503-25064551)
chr2 (4-39)||(14684707-14684742)
chr2 (4-39)||(40421531-40421566)
[»] chr8 (1 HSPs)
chr8 (39-235)||(36241073-36241268)
[»] chr3 (7 HSPs)
chr3 (39-235)||(25184729-25184925)
chr3 (44-209)||(35390489-35390660)
chr3 (153-230)||(55380327-55380404)
chr3 (166-201)||(42428432-42428467)
chr3 (10-39)||(39984774-39984803)
chr3 (169-201)||(9678749-9678781)
chr3 (42-86)||(24864854-24864898)
[»] chr7 (5 HSPs)
chr7 (42-235)||(17165852-17166048)
chr7 (38-193)||(41483079-41483240)
chr7 (38-122)||(7975991-7976075)
chr7 (169-205)||(29250494-29250530)
chr7 (4-39)||(13077681-13077716)
[»] chr4 (8 HSPs)
chr4 (38-235)||(25542283-25542486)
chr4 (157-235)||(11840873-11840951)
chr4 (4-45)||(54642308-54642349)
chr4 (167-202)||(48879617-48879652)
chr4 (4-39)||(54938793-54938828)
chr4 (167-208)||(40578890-40578931)
chr4 (169-206)||(40868891-40868928)
chr4 (173-201)||(45019069-45019097)
[»] chr6 (5 HSPs)
chr6 (166-235)||(10857321-10857390)
chr6 (38-122)||(832201-832285)
chr6 (143-222)||(832043-832122)
chr6 (158-206)||(23112484-23112532)
chr6 (158-206)||(23117282-23117330)
[»] scaffold0245 (1 HSPs)
scaffold0245 (169-205)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (169-205)||(6536-6572)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 41109209 - 41108971
Alignment:
Q  1 aacgtaccacggttccaagatcgatgctctgataccagtgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagatt 100  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||| || ||||||||  |||||||||||||||||||||| |||||    
T  41109209 aacgtaccacagttccaagattgatgctctgatactagtgttagattctggttcagatgtgaataaataccgatgataattctatggtatttggtagatt 41109110  T
Q  101 attgcataataataagggaatgatctattattattgatataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctccca 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  41109109 attgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaaccaacctctaggaattagagagcccagtctctccca 41109010  T
Q  201 aaccaaccctcatacaaaatacccaatgccttccccttt 239  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  41109009 aaccaacccacatacaaaatacccaatgccttccccttt 41108971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 18691231 - 18691030
Alignment:
Q  38 gtgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattga 137  Q
    ||||||||| ||||||||||| || ||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  18691231 gtgttagattctggttcagatgtgaataaataccgatgataattctatggtatttggtagattattgcataataataaaggaatgatctattattattga 18691132  T
Q  138 tataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttcccct 237  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18691131 tataagaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccttcccct 18691032  T
Q  238 tt 239  Q
    ||    
T  18691031 tt 18691030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 33215070 - 33215264
Alignment:
Q  39 tgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattgat 138  Q
    |||||||||||||||||||| || ||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |  ||||||||||    
T  33215070 tgttagatactggttcagatgtgaataaataccgatgataattcaatggtatttgggagattattgcataataataagggaatgatgt--tattattgat 33215167  T
Q  139 ataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    | | ||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  33215168 acatgaaagtaactgcagaaaagtaaccaacctctagaaattagagagcctagtctctcccaaaccaacccacatacaaattacccaatgccctccc 33215264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 41109828 - 41109725
Alignment:
Q  38 gtgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattga 137  Q
    ||||||||| ||||||||||| || ||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  41109828 gtgttagattctggttcagatgtgaataaataccgatgataattctatggtatttggtagattattgcataataataaaggaatgatctattattattga 41109729  T
Q  138 tata 141  Q
    ||||    
T  41109728 tata 41109725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 22726534 - 22726498
Alignment:
Q  170 ctctaggaattagagagcctagtctctcccaaaccaa 206  Q
    |||||||||||||||||||||||||||||||||||||    
T  22726534 ctctaggaattagagagcctagtctctcccaaaccaa 22726498  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 33214583 - 33214546
Alignment:
Q  165 ccaacctctaggaattagagagcctagtctctcccaaa 202  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  33214583 ccaacctttaggaattagagaccctagtctctcccaaa 33214546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 38 - 239
Target Start/End: Original strand, 11359324 - 11359525
Alignment:
Q  38 gtgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattga 137  Q
    ||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  11359324 gtgttagattctggttcagatgtgaataaatacagatgataattctatggtatttggtagattattgcataataataaaggaatgatctattattattga 11359423  T
Q  138 tataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttcccct 237  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11359424 tataagaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccttcccct 11359523  T
Q  238 tt 239  Q
    ||    
T  11359524 tt 11359525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 5722042 - 5721850
Alignment:
Q  42 tagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattgatata 141  Q
    ||||| ||||||||||| || ||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  5722042 tagattctggttcagatgtgaataaataccgatgataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatata 5721943  T
Q  142 agaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  5721942 agaaagtaactgcagaaaagt-accaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccc 5721850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 52975688 - 52975724
Alignment:
Q  165 ccaacctctaggaattagagagcctagtctctcccaa 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  52975688 ccaacctctaggaattagagagcctagtctctcccaa 52975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 1280564 - 1280528
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaaacca 205  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1280564 cctctaggaatcagagagcctagtctctcccaaacca 1280528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 35764188 - 35764138
Alignment:
Q  157 aaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaac 207  Q
    |||| |||| ||||| ||||||||| |||| ||||||||||||||||||||    
T  35764188 aaaactaacaaacctttaggaattatagagtctagtctctcccaaaccaac 35764138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 49105556 - 49105523
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaaa 202  Q
    ||||||||||| ||||||||||||||||||||||    
T  49105556 cctctaggaatcagagagcctagtctctcccaaa 49105523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 17508577 - 17508545
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaa 201  Q
    ||||||||||||||||||||| |||||||||||    
T  17508577 cctctaggaattagagagccttgtctctcccaa 17508545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 43904401 - 43904365
Alignment:
Q  165 ccaacctctaggaattagagagcctagtctctcccaa 201  Q
    ||||||||| | |||||||||||||||||||||||||    
T  43904401 ccaacctcttgaaattagagagcctagtctctcccaa 43904365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 39814722 - 39814530
Alignment:
Q  42 tagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattgatata 141  Q
    ||||| ||||||||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  39814722 tagattctggttcagatgtgaataaatgcagatgataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatata 39814623  T
Q  142 agaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  39814622 agaaagtaactgcagaaaagt-accaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccc 39814530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 12987338 - 12987525
Alignment:
Q  49 tggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatg------atctattattattgatataa 142  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||      || |||||||||||||| |     
T  12987338 tggttcagatatgaataaataccaatgataattctatggtatttgggagattatagcataataataagggaatgcacgtgatgtattattattgatacag 12987437  T
Q  143 gaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgcc 230  Q
    ||||||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12987438 gaaagtaactgcagaaaagtaatcaacctctaggaatcagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgcc 12987525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 25059752 - 25059704
Alignment:
Q  158 aaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaa 206  Q
    ||||||| |||||||||||| |||||||||||||  |||||||||||||    
T  25059752 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 25059704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 25064551 - 25064503
Alignment:
Q  158 aaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaa 206  Q
    ||||||| |||||||||||| |||||||||||||  |||||||||||||    
T  25064551 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 25064503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 14684742 - 14684707
Alignment:
Q  4 gtaccacggttccaagatcgatgctctgataccagt 39  Q
    |||| |||||||||||||||||||||||||||||||    
T  14684742 gtacaacggttccaagatcgatgctctgataccagt 14684707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 40421566 - 40421531
Alignment:
Q  4 gtaccacggttccaagatcgatgctctgataccagt 39  Q
    |||| |||||||||||||||||||||||||||||||    
T  40421566 gtacaacggttccaagatcgatgctctgataccagt 40421531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 36241073 - 36241268
Alignment:
Q  39 tgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattgat 138  Q
    ||||||||||||||||| || || |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  36241073 tgttagatactggttcaaatgtgaataaataccaatgataattctatggtatttgggagat-attgcataataataagggaatgatgtattattattgat 36241171  T
Q  139 ataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    | | ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  36241172 acaggaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccc 36241268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 25184925 - 25184729
Alignment:
Q  39 tgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattgat 138  Q
    |||| ||||||||||||||| || |||||||  | |||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||    
T  25184925 tgttggatactggttcagatgtgaataaatatcactgataaatctatggtatttgggagattattgcataataataagcgaatgatgttttattattgat 25184826  T
Q  139 ataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  25184825 ataggaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccc 25184729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 35390660 - 35390489
Alignment:
Q  44 gatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaa------tgatctattattattga 137  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||| ||      |||| ||||||||||||    
T  35390660 gatactggttcagatatctataaataccaatgataattctatggtatttggtagattattgtaaaataataaggaaatgcatgtgatgtattattattga 35390561  T
Q  138 tataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccc 209  Q
    || | | ||||||||  ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  35390560 tacatgtaagtaactgcagaaaggtaaccaacctttaggagttagagagcctagtctctcccaaaccaaccc 35390489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 55380327 - 55380404
Alignment:
Q  153 atagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgcc 230  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||  |||| |||||| | ||||||    
T  55380327 atagaaaactaacaaacctctaggaattagagagcctagtctctcccaaaccaaccaacatataaaataactaatgcc 55380404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 42428467 - 42428432
Alignment:
Q  166 caacctctaggaattagagagcctagtctctcccaa 201  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428467 caacctctaggaattagagagcctagtctctcccaa 42428432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 39984774 - 39984803
Alignment:
Q  10 cggttccaagatcgatgctctgataccagt 39  Q
    ||||||||||||||||||||||||||||||    
T  39984774 cggttccaagatcgatgctctgataccagt 39984803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 9678781 - 9678749
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaa 201  Q
    ||||||||||| |||||||||||||||||||||    
T  9678781 cctctaggaatcagagagcctagtctctcccaa 9678749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 24864898 - 24864854
Alignment:
Q  42 tagatactggttcagatatgtataaatacaaatgataattctatg 86  Q
    |||||||||||||||||||| ||||| || |||| ||||||||||    
T  24864898 tagatactggttcagatatgaataaacaccaatggtaattctatg 24864854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 17165852 - 17166048
Alignment:
Q  42 tagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatgatctattattattgat--- 138  Q
    ||||||||||||||||| || |||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||       
T  17165852 tagatactggttcagatgtgaataaatatcgatgataattctatggtatttgggagattattgcataataataagggaatgatatattattattgatcat 17165951  T
Q  139 ataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    | | ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  17165952 acaggaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaactacccaatgccctccc 17166048  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 41483240 - 41483079
Alignment:
Q  38 gtgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaa------tgatctattat 131  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||      |||| ||||||    
T  41483240 gtgttatatactggttcagatatgtataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgcacgtgatgtattat 41483141  T
Q  132 tattgatataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtc 193  Q
    |||| ||| | ||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  41483140 tattcatacaggaaagtaactgcagaaaagtaacctacctctaggaattagagagcctagtc 41483079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 7976075 - 7975991
Alignment:
Q  38 gtgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatg 122  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||||   ||| |||| ||||||||||| |||||| | ||||||    
T  7976075 gtgttagataccggttcagatatgaataaataccaatgataattcttcagtacttgggagattattgcaaaataatcaaggaatg 7975991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 29250530 - 29250494
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaaacca 205  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29250530 cctctaggaatcagagagcctagtctctcccaaacca 29250494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 13077716 - 13077681
Alignment:
Q  4 gtaccacggttccaagatcgatgctctgataccagt 39  Q
    |||| |||||||||||||||||||||||||||||||    
T  13077716 gtacaacggttccaagatcgatgctctgataccagt 13077681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 25542283 - 25542486
Alignment:
Q  38 gtgttagatactggttcagatatgtataaatacaaatgataat------tctatggtatttggaagattattgcataataataagggaatgatctattat 131  Q
    ||||||||||| ||||||||| || ||||||||  ||||||||      |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  25542283 gtgttagataccggttcagatgtgaataaataccgatgataattctaattctatggtatttgggagattattgcataataataagggaatgatgtattat 25542382  T
Q  132 tattgatataagaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgcct 231  Q
    |||||||| | ||||||||||  | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||     
T  25542383 tattgatacaggaaagtaactgcataaaagtaaccaacctctagcaattagagagcctagtccctcccaaaccaacccacataaaaaatacccaatgccc 25542482  T
Q  232 tccc 235  Q
    ||||    
T  25542483 tccc 25542486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 11840951 - 11840873
Alignment:
Q  157 aaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    |||| |||| ||||||||||||||||||| |||||||||||||||||||| |   |||||||||||||| |||| ||||    
T  11840951 aaaattaacaaacctctaggaattagagaacctagtctctcccaaaccaaactatatacaaaatacccagtgccctccc 11840873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 54642308 - 54642349
Alignment:
Q  4 gtaccacggttccaagatcgatgctctgataccagtgttaga 45  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  54642308 gtaccacggttccaagattgatgctctgataccagtgataga 54642349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 48879617 - 48879652
Alignment:
Q  167 aacctctaggaattagagagcctagtctctcccaaa 202  Q
    ||||||||||| ||||||||||||||||||||||||    
T  48879617 aacctctaggacttagagagcctagtctctcccaaa 48879652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 54938793 - 54938828
Alignment:
Q  4 gtaccacggttccaagatcgatgctctgataccagt 39  Q
    |||| |||||||||||||||||||||||||||||||    
T  54938793 gtacaacggttccaagatcgatgctctgataccagt 54938828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 40578890 - 40578931
Alignment:
Q  167 aacctctaggaattagagagcctagtctctcccaaaccaacc 208  Q
    |||| |||||||||||||||| ||||||||||||| ||||||    
T  40578890 aaccactaggaattagagagcttagtctctcccaacccaacc 40578931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 40868928 - 40868891
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaaaccaa 206  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  40868928 cctctaggaattagagagcctattctctctcaaaccaa 40868891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 45019069 - 45019097
Alignment:
Q  173 taggaattagagagcctagtctctcccaa 201  Q
    |||||||||||||||||||||||||||||    
T  45019069 taggaattagagagcctagtctctcccaa 45019097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 10857321 - 10857390
Alignment:
Q  166 caacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatacccaatgccttccc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  10857321 caacctctaggaattagagagcctagtctctcccaaaccaaccaacatacaaaatactcaatgccctccc 10857390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 832285 - 832201
Alignment:
Q  38 gtgttagatactggttcagatatgtataaatacaaatgataattctatggtatttggaagattattgcataataataagggaatg 122  Q
    ||||||||||||||||||||||    ||||||| ||||||||||||||| |||||||  |||||||| |||||||||||||||||    
T  832285 gtgttagatactggttcagataatattaaataccaatgataattctatgatatttgggggattattggataataataagggaatg 832201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 832122 - 832043
Alignment:
Q  143 gaaagtaactatagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaaccctcatacaaaatac 222  Q
    ||||||||||  | |||| |||| ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  832122 gaaagtaactgcataaaactaacaaacctctaggaattatagagcctagtctctcccaaaccaaccaacatacaaaatac 832043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 23112532 - 23112484
Alignment:
Q  158 aaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaa 206  Q
    ||||||| |||||||||||| |||||||||||||  |||||||||||||    
T  23112532 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 23112484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 23117330 - 23117282
Alignment:
Q  158 aaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaa 206  Q
    ||||||| |||||||||||| |||||||||||||  |||||||||||||    
T  23117330 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 23117282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 6242 - 6206
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaaacca 205  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6242 cctctaggaatcagagagcctagtctctcccaaacca 6206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 6572 - 6536
Alignment:
Q  169 cctctaggaattagagagcctagtctctcccaaacca 205  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6572 cctctaggaatcagagagcctagtctctcccaaacca 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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