View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_high_22 (Length: 243)
Name: NF10056_high_22
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 24086004 - 24085775
Alignment:
| Q |
4 |
atgatttgttcgagaacctgaaaagaaattcacgccagaatgattaatcatttctagaaaaaagattgtgtagaaaggaaacaaggaactgtcctgtttg |
103 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24086004 |
atgatttgttcgagaacctgaaaagaaattcggaccagaatggttaatcatttctagaaaaaagattgtgtagacaggaaacaaggaactgtcctgtttt |
24085905 |
T |
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| Q |
104 |
taattgtatgtcaaaatgtgaatgtgtacatgtcagaaaacttgtgaacttgt----------ttcatcagaatattgttagtcgaagtctaaatgcatt |
193 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
24085904 |
taattgtatgtcaaaacgtgaatgtgtacatgtcagaaaatttgtgaacttgtttcaagttgtttcatcagaatgttgttagtcgaagtctaaatgcatt |
24085805 |
T |
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| Q |
194 |
gaagatataagcttgtagaattatgttaga |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24085804 |
gaagatataagcttgtagaattatgttaga |
24085775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 29015629 - 29015400
Alignment:
| Q |
4 |
atgatttgttcgagaacctgaaaagaaattcacgccagaatgattaatcatttctagaaaaaagattgtgtagaaaggaaacaaggaactgtcctgtttg |
103 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29015629 |
atgatttgttcgagaacctgaaaagaaatttggaccagaatggttaatcatttctaaaaaaaagattgtgtagaagggaaacaaggaactgtcctgtttg |
29015530 |
T |
|
| Q |
104 |
taattgtatgtcaaaatgtgaatgtgtacatgtcagaaaacttgtgaacttgtt----------tcatcagaatattgttagtcgaagtctaaatgcatt |
193 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
29015529 |
taattgtatgtcaaaatatgaatgtgtacatgttagaaaatttgtgaacttgtttcaagttgtgtcatcagaatgttgttagtcgaagtctaaatgcatt |
29015430 |
T |
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| Q |
194 |
gaagatataagcttgtagaattatgttaga |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29015429 |
gaagatataagcttgtagaattatgttaga |
29015400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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