View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_high_24 (Length: 239)
Name: NF10056_high_24
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42875882 - 42875644
Alignment:
| Q |
1 |
gaattggacaccattggatcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaacca |
100 |
Q |
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| T |
42875882 |
gaattggacaccattggatcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaacca |
42875783 |
T |
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| Q |
101 |
gcaattttgtacacaggaattgatccaaataatcatcaagttcaaaacatagccatacccaaaaatatgtctgacccattacttagagaatggaaaaaat |
200 |
Q |
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| T |
42875782 |
gcaattttatacacaggaattgatccaaataatcatcaagttcaaaacatagccatacccaaaaatatgtctgacccattacttagagaatggaaaaaat |
42875683 |
T |
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| Q |
201 |
caccaaaaaatccattgatggaacctactgttgctaaca |
239 |
Q |
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| T |
42875682 |
caccaaaaaatccattgatggaacctactgttgctaaca |
42875644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 5902486 - 5902679
Alignment:
| Q |
32 |
ccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaata |
131 |
Q |
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| T |
5902486 |
ccatctcaaccgtccgatataaatggttgttggtcaggatcagccacaatacttcatggtaacaaaccagctattttatacactggaattgacccaatga |
5902585 |
T |
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| Q |
132 |
atcatcaagttcaaaacatagccataccc-aaaaatatgtctgacccattacttagagaatggaaaaaatcaccaaaaaatccattgatggaacc |
225 |
Q |
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| T |
5902586 |
atcaccaagttcaaaatatag-cataccctaaaaatttatccgacccttttctaagggaatggattaagtcaccaaaaaatccattaatggaacc |
5902679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 4118525 - 4118457
Alignment:
| Q |
57 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatc |
125 |
Q |
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| T |
4118525 |
gttgttggtcaggttcagcaactatactcccaggtgaaaaacctgctattttgtacacaggaattgatc |
4118457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 4129717 - 4129600
Alignment:
| Q |
57 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaataatcatcaagttcaaaacatagccat |
156 |
Q |
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| T |
4129717 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaatttagccat |
4129618 |
T |
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| Q |
157 |
acccaaaaatatgtctga |
174 |
Q |
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| T |
4129617 |
gccaaagaatctgtctga |
4129600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 4138433 - 4138316
Alignment:
| Q |
57 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaataatcatcaagttcaaaacatagccat |
156 |
Q |
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| T |
4138433 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaatttagccat |
4138334 |
T |
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| Q |
157 |
acccaaaaatatgtctga |
174 |
Q |
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| T |
4138333 |
gccaaagaatctgtctga |
4138316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 27991216 - 27991162
Alignment:
| Q |
150 |
tagccatacccaaaaatatgtctgacccattacttagagaatggaaaaaatcacc |
204 |
Q |
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| T |
27991216 |
tagctatacccaaaaatgtgtctgacccatttcttagggaatggataaaatcacc |
27991162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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