View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_high_25 (Length: 239)
Name: NF10056_high_25
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 43348820 - 43348601
Alignment:
| Q |
4 |
ttattattttaaa-gaaattatcattataatatcatctactcaacccaa-----agtaattggccactaaccattaaccgacatccacccacacatatag |
97 |
Q |
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| T |
43348820 |
ttattattttaaatgaaattatcattataatatcctctactcaacccaacccaaagtaattggccactaaccattaaccgacatccacccacacatatag |
43348721 |
T |
|
| Q |
98 |
ctagaaaatcatacaaaatcttacacattctaaatcgagtataaaaatggaatttcaagcaaagaagaaacat---ataaactcaccctaaaatggaatg |
194 |
Q |
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| T |
43348720 |
ctagaaaatcatacaaaatcttacacattctaaatcgagtataaaaatgcaatttcaagcaaagaagaaacatataataaactcaccctaaaatggaatg |
43348621 |
T |
|
| Q |
195 |
cctgacctaagcagcttacg |
214 |
Q |
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|||||||||| ||||||||| |
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| T |
43348620 |
cctgacctaaacagcttacg |
43348601 |
T |
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