View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_high_4 (Length: 475)
Name: NF10056_high_4
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 29004011 - 29004457
Alignment:
| Q |
19 |
tcaagattcttcacatcaacatcagcaagtgtcaaaacactaaccccttgtcgcgctttaagcatcgactgctctctcttcggtaacacattccatttct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
29004011 |
tcaagattcttcacatcaacatcagcaagtgtcaaaacactaaccccttgtcgcgctttaagcatcgattgctctcttttcggtaacacattccatttct |
29004110 |
T |
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| Q |
119 |
tctgccactcacaaacaagtgctggccctgttgcttctgttagtccataagcatgtgttacatgaaaaccaagtggctcgattttctcaagtagggacgc |
218 |
Q |
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|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29004111 |
tctgccactcacaaactagtgctggccctgttgcctcagttagtccataagcatgtgttacatgaaaaccaagtggctcgattttctcaagtagggacgc |
29004210 |
T |
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| Q |
219 |
cgggggtggcgctccaccggttagtatatttaccggagattttatgactcttttttcgcttggtttcgcgcctaaaataatattgaaaatgatcggtgcg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29004211 |
cgggggtggcgctccaccggttagtatatttaccggagattttatgactctcttttcgcttggtttcgcgcctaaaataatattgaaaatgatcggtgcg |
29004310 |
T |
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| Q |
319 |
caacacatgtgtgtcacattatagagatttatagctctatatatatcagatgctgcagtgtttctgatacaaatgtttgtacctcctcttgcagctacac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29004311 |
caacacatgtgtgtcacattatagagatttatagctctatatatatcagatgctgcagtgtttctgatacaaatgtttgtacctcctcttgcagctacac |
29004410 |
T |
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| Q |
419 |
cccaagtgaatgtccaaccattacaatggaacataggtgatgtccat |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29004411 |
cccaagtgaatgtccaaccattacaatggaacataggtaatgtccat |
29004457 |
T |
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