View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_1 (Length: 672)
Name: NF10056_low_1
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 618
Target Start/End: Complemental strand, 16910863 - 16910263
Alignment:
| Q |
18 |
agatatgcagaggacagttgcattgtgttgtagacaccaacagtcaagaaccaaggtgcttaacatcttaaaatttgaaaagggttccacaatgccatta |
117 |
Q |
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| T |
16910863 |
agatatgcagaggacagttgcattgtgttgtagagaccaacagttaaggaccaaagtgcttaacatcttaaaatttgaaaagggttccacaatgccattg |
16910764 |
T |
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| Q |
118 |
tcatttgcaacaaaagtgacagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatcatccaacggacaccccaaaata |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16910763 |
tcatttgcaacaaaagtggcagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatcatccaagggacaccccaaaata |
16910664 |
T |
|
| Q |
218 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaattctcgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16910663 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaagtgtaaccgggtttgaaattcaaataaagttcaagtgtgaaattctcgac |
16910564 |
T |
|
| Q |
318 |
attatgtgacatcgcatatttcatgaccatgtccacaagttcaggttcaacgcctccttcatttcttaaaacaatatcttgtaaagaaattgatttgtca |
417 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16910563 |
attatgtgacatagcatatttcatgaccgcgtccacaagtttaggttcaacgcctctttcatttcttaaaacaatatcttgtaaagaaattgatttgtca |
16910464 |
T |
|
| Q |
418 |
cgatgagacagaactgaaaacacaaattgattataattcggtaagccacgagcgaatactgaattattcaatgcaagagtcgtgactcttcgccaaagtg |
517 |
Q |
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| T |
16910463 |
cgatgagacagaactgaaaacacaaattgattataattgggtaagccacgagcgaatactgaattattcaatgcaagagtagtgactcttcgccaaagtg |
16910364 |
T |
|
| Q |
518 |
tcttccatctagtagacaatacacaagtttgaacaacttgttttgtgtccataaacttcatcatattgagcaaaacagaatcacacaagtcactaagccg |
617 |
Q |
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| T |
16910363 |
tcttccatctagtagacaatacacaagtttgaacaacttgttttgtgtccataaacttcattatattgagcaaaacagaatcacacaagtcactaagccg |
16910264 |
T |
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| Q |
618 |
g |
618 |
Q |
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| T |
16910263 |
g |
16910263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 50790290 - 50790383
Alignment:
| Q |
218 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaatt |
311 |
Q |
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||||||| ||| ||||||||||| |||||||||||||||||| |||| |||||||| | || |||||| ||| || ||||||||| ||||| |
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| T |
50790290 |
aaagcttaagacatgtcaaagattgacaagaaaagatgctagggtgcaatgtgtaaccgcgcttaaaattcgaatcaacttcaagagttaaatt |
50790383 |
T |
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