View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_13 (Length: 377)
Name: NF10056_low_13
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 31941792 - 31941426
Alignment:
| Q |
1 |
ctcctccttcaccggaactcgttcagtagacatggcgaacagcgggactatgctcatgattccaccggacttcactttcaaggccttagacagtggcacg |
100 |
Q |
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| T |
31941792 |
ctcctccttcaccggaactcgttcagtagacatggcgaaccgcgggactatgctcatgattccaccggacttcactttcatggccttagacagtggcacg |
31941693 |
T |
|
| Q |
101 |
tggtggaagagaggggaggaaacggtggggaagaaacaaactccagcggcaagcatggctgttggtgagtcagatttgaagctgaagcagtttggaattc |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31941692 |
tggtggaagagagaggaggaaacggtggggaagaaacaaactccagcggcaagcatggctgttggtgagtcaggtttgaagctgaagcagtttggaattc |
31941593 |
T |
|
| Q |
201 |
aatggtaattattaacatgatgacaattaatctcaatatgaagatgtgatatatatggtataaatatgatgaaatagtacgtaataaataaattatgtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31941592 |
aatggtaattattaacatgatgacaattaatctcaatatgaagatgagatatatatggtataaatatgatgaaatagtacgtaataaatcaattatgtga |
31941493 |
T |
|
| Q |
301 |
ctagaaaaaacacatgtattgctcattatggctgcgcttgtgtgtttgagttgtgtacgagtctctg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31941492 |
ctagaaaaaacacatgtattgctcattatggctgcgcttgtgtgtttgagttgtgtacgagtctctg |
31941426 |
T |
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