View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_16 (Length: 358)
Name: NF10056_low_16
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 48800438 - 48800097
Alignment:
| Q |
1 |
aaatatcctttgtacatgattttgtttgtcttgttaccttgtcaattctttgatgttatcttgtctattcatagtggcctagtttgaccaatataaaatc |
100 |
Q |
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| T |
48800438 |
aaatatcctttgtacatgattttgtttgtcttgttaccttgtcaattctttgatgttatcttgtctattcatagtggcctagtttgaccaatataaaatc |
48800339 |
T |
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| Q |
101 |
ttgcaacatgataatgagtcatgctattttttattactaagttaatgagtcatgcttatgcatttattttcttatagaattcaaaaattaccatacaatt |
200 |
Q |
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| T |
48800338 |
ttgcaacatgataatgagtcatgctattttttattactaagttaatgagtcatgcttatgcatttattttcttatagaattcaaaaattaccatacaatt |
48800239 |
T |
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| Q |
201 |
tatacttataagttggagtaaataataaatacaatttaatgtcctgtttaaattgtgatggaaatggataaaatatgttaaatagatatctcacatggct |
300 |
Q |
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| T |
48800238 |
tatacttataagttggagtaaataataaatacaatttaatgtcctgtttaaaatgtgatggaaatggatagaatatgttaaatagatatctcacatggct |
48800139 |
T |
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| Q |
301 |
tgagtaggctgtgaccctaacttatcaaaatatgcaacaatt |
342 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48800138 |
tgattaggctgtgaccctaacttatcaaaatatgcaacaatt |
48800097 |
T |
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