View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_17 (Length: 335)
Name: NF10056_low_17
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 25880158 - 25880063
Alignment:
| Q |
1 |
gcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatgttaatt |
96 |
Q |
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| T |
25880158 |
gcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatgttaatt |
25880063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 25879551 - 25879421
Alignment:
| Q |
161 |
aatgtaattacatatgtcaggttggtgtctggcacggacatgtatttaatctgaaatgtcggtagtggtttcatatattaataaaaagtttaataaagtg |
260 |
Q |
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| T |
25879551 |
aatgtaattacatatgttaggttggtttcccataccgacacgtctttaatctaaaatgttggtagt------acatattaataaaaagtttaataaagtg |
25879458 |
T |
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| Q |
261 |
gttccatcaaattcaaaattttgttaaaatttgttat |
297 |
Q |
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| T |
25879457 |
gttccatcaaattcaaaattttgttaatatttgttat |
25879421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 25880049 - 25879994
Alignment:
| Q |
79 |
ggtatgtttatgttaattatgtatctatatgtgttcatgagaaaataacaataata |
134 |
Q |
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| T |
25880049 |
ggtatgtttttgttaattatgtatctctatgtgttcatgaaaaaataacaataata |
25879994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14313048 - 14312956
Alignment:
| Q |
1 |
gcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatgtta |
93 |
Q |
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| T |
14313048 |
gcagatcgtacaattattagcattgctcacagaataccaacagttatggattgtgacagggttttggtcatagatgcaggtatctttatgtta |
14312956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 14275097 - 14274980
Alignment:
| Q |
1 |
gcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatgttaattatgt |
100 |
Q |
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| T |
14275097 |
gcagatcgtacaatcattagcattgctcacaggatacctacagttatggactgtgatagggttttggtcatagatgaaggtatgtttatg----ttatat |
14275002 |
T |
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| Q |
101 |
atctatatgtgttcatgagaaa |
122 |
Q |
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| T |
14275001 |
atccatatgtgttcatgagaaa |
14274980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 14297014 - 14296928
Alignment:
| Q |
4 |
gatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatg |
90 |
Q |
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| T |
14297014 |
gatcgtacaatcattagcattgctcatagaataccaacagttatggattgtgacaaggttttggtcatagatgaaggtatgtttatg |
14296928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 14307366 - 14307256
Alignment:
| Q |
3 |
agatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatgttaattatgtat |
102 |
Q |
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| T |
14307366 |
agatcgtacggttgttaacattgttcacagaatacaaacagttatggactgtgacagggttttggtcatagatgcaggcatgtttatgttatatatctat |
14307267 |
T |
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| Q |
103 |
ctatatgtgtt |
113 |
Q |
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|||||||||| |
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| T |
14307266 |
ttatatgtgtt |
14307256 |
T |
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