View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_19 (Length: 318)
Name: NF10056_low_19
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 5849570 - 5849877
Alignment:
| Q |
1 |
acccaatctcatatcctttgctacatccacaatatccttcttccattctttatgatcaatggtgcctactccatttctacatttaacgttatcgctatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5849570 |
acccaatctcatatcctttgctacatccacaatatccttcttccattctttatgaccaatggtgcctactccatttctacatttaactttatcgctatat |
5849669 |
T |
|
| Q |
101 |
caaagtttttgcttttgacctgcccacttagttttttgtaggcacacaaaattgattctcgttcctaatcacaatgtcaactattttcattgattttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5849670 |
caaagtttttgcttttgacctgcccacttagttttttgtaggcacacaaaattgattctcgttcctaagcacaatgtcaactattttcattgattttctt |
5849769 |
T |
|
| Q |
201 |
ttaagagtgtatagattcctaattacaaaaa-gaattatactataatgaactaacttctttaaccacatccatttacaaaaatttgagaactcatgctta |
299 |
Q |
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||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849770 |
ttaagagtgtacagattcctagttacaaaaaggaattatactataatgaactaacttctttaaccacatccatttacaaaaatttgagaactcatgctta |
5849869 |
T |
|
| Q |
300 |
tttttcat |
307 |
Q |
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|||||||| |
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| T |
5849870 |
tttttcat |
5849877 |
T |
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