View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_20 (Length: 308)
Name: NF10056_low_20
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 8816883 - 8817160
Alignment:
| Q |
18 |
ctagtatagttccaatttccgagcatttttgtagccatagacaaacatccaaattctgaaacctaaattgcttctcattataaaaaccaaacatagaaaa |
117 |
Q |
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| T |
8816883 |
ctagtatagttccaatttccaagcatttttgtagccatagacaaacatccaaattctgaaacctaaattgcttctcattataaaaaccaaacatagaaaa |
8816982 |
T |
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| Q |
118 |
atatggtaaagttaaccacatttgatcattgcaaacacaagtttgaggttccaaccaaggaaccaaacaagcactaaaacaactcatctattactgcaca |
217 |
Q |
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| T |
8816983 |
atatggtaaagttaaccacatttgatcattgcaaacgcaagtttgaggttccaaccaaggaaccaaacaagcactaaaacaactcatctattactgcaca |
8817082 |
T |
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| Q |
218 |
acattatattactttgtatgtacacacattaaacaatacatagacaacttatttcatatttgagactttgagtgacct |
295 |
Q |
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| T |
8817083 |
acattatattactttgtatgtacacacattaaacaatacatagacaacttatttcatatttgagactttgagtgacct |
8817160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 8818635 - 8818703
Alignment:
| Q |
144 |
cattgcaaacacaagtttgaggttccaaccaaggaaccaaacaagcactaaaacaactcatctattact |
212 |
Q |
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| T |
8818635 |
cattgcaaactcaagtttgagcttcccacaatagagccaaacaagcataaaaacaactcatgtattact |
8818703 |
T |
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