View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10056_low_23 (Length: 295)

Name: NF10056_low_23
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10056_low_23
NF10056_low_23
[»] chr7 (1 HSPs)
chr7 (10-295)||(3186742-3187027)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 3186742 - 3187027
Alignment:
Q  10 gacatcaaagagaatcgaaacctcaagagaatcatacgtcaaggtcagaatccaacatcaataaaccaatctaaatggattaacaatatagatatttata 109  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  3186742 gacatcaaagataatcgaaatctcaagagaatcatacttcaaggtcagaatctaacatcaataagccaatctaaatggattaataatatagatatttata 3186841  T
Q  110 acgatattttagagattgtgttatttaaaaatattttaagttgtcaaccgaaaacaaactagagtcaaagtaaggctaacaacttagccttgctttgaga 209  Q
    || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  3186842 acaatattttaaagattgtgttatttaaaaacattttaagttgtcaaccgaaaacaaactagagtcaaagtaaggctaacaacttagtcttactttgaga 3186941  T
Q  210 tatgactttattgagtcaacttgaggtacaccttaactttatagacatgtgacttgtgactttattgaatccactttaagcacatc 295  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| | |||||||||    
T  3186942 tgtgattttattgagtcaacttgaggtacaccttaactttatagacatgtgacttgtgacttcgttgaatccacatgaagcacatc 3187027  T

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