View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_24 (Length: 290)
Name: NF10056_low_24
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 10868041 - 10868320
Alignment:
| Q |
1 |
tattgttgagttatgtctctgtttttctttaacactcttgacaatttattttcttgttttatttatttctctatgcaataaatatcaaaaagagttattc |
100 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10868041 |
tattgtagagttatgtctctctttttctttaacactcttgacaatttattttcttgttttatttatttctctctgcaataaatatcaaaaagagttattt |
10868140 |
T |
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| Q |
101 |
acaaaataataattaatgttccatttaactttgaaatgatacaattcttttgatgtagaaattgaagtgtagaaatttttcatagccaaagtgattctca |
200 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||| | | ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10868141 |
tcaaaataataattaatgttctatttaaatttgaaatgatacaattatctcgatgttgaaattgaagtgtagaaatttttcataaccaaagtgattctca |
10868240 |
T |
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| Q |
201 |
cgtgataccagttgcttatctacttttcttagttactctttttgtgttcattgtatctatcattttaacttgtttctctg |
280 |
Q |
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|||||||| | | | ||| ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10868241 |
cgtgatactactcgtttacctacttttcttctttacactttttgcgttcattgtatctatcattttaacttgtttctctg |
10868320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 10886328 - 10886049
Alignment:
| Q |
1 |
tattgttgagttatgtctctgtttttctttaacactcttgacaatttattttcttgttttatttatttctctatgcaataaatatcaaaaagagttattc |
100 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10886328 |
tattgtagagttatgtctctctttttctttaacactcttgacaatttattatcttgttttatttatttctctctgcaataaatatcaaaaagagttattt |
10886229 |
T |
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| Q |
101 |
acaaaataataattaatgttccatttaactttgaaatgatacaattcttttgatgtagaaattgaagtgtagaaatttttcatagccaaagtgattctca |
200 |
Q |
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||||||||||||||| |||| |||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10886228 |
tcaaaataataattaacgttctatttaaatttgaaatgatacaattatctcgatgtagaaattgaagtgtagaaatttttcataaccaaagtgattctca |
10886129 |
T |
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| Q |
201 |
cgtgataccagttgcttatctacttttcttagttactctttttgtgttcattgtatctatcattttaacttgtttctctg |
280 |
Q |
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|||||||| ||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
10886128 |
cgtgatactagtcgtttacctacttttcttagttacactttttgcgttcattgtatctatcattgtaacttgtatctctg |
10886049 |
T |
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