View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10056_low_25 (Length: 289)

Name: NF10056_low_25
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10056_low_25
NF10056_low_25
[»] chr2 (2 HSPs)
chr2 (65-289)||(41734261-41734485)
chr2 (13-48)||(41734224-41734259)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 65 - 289
Target Start/End: Original strand, 41734261 - 41734485
Alignment:
Q  65 cgttgaggataaccttgatgaaatagaagcaactctagctaggttaaaaaaggagttaggcttatagaacacaatgatagctggttgaagaggaaatgcc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41734261 cgttgaggataaccttgatgaaatagaagcaactctagctaggttaaaaaaggagttaggcttatagaacacaatgatagctggttgaagaggaaatgcc 41734360  T
Q  165 aatttattgcttctcatttatttatcttttggtggctcttgtaaatttgagtcaccaaattgaaaagtaaatatgtaatttagtccttgaaattgtagga 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41734361 aatttattgcttctcatttatttatcttttggtggctcttgtaaatttgagtcaccaaattgaaaagtaaatatgtaatttagtccttgaaattgtagga 41734460  T
Q  265 ctgtatcaatatagtcttccatata 289  Q
    |||||||||||||||||||||||||    
T  41734461 ctgtatcaatatagtcttccatata 41734485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 41734224 - 41734259
Alignment:
Q  13 cagagacaccaagcaacagcactcaaggtggagcta 48  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41734224 cagagacaccaagtaacagcactcaaggtggagcta 41734259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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