View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_35 (Length: 236)
Name: NF10056_low_35
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_35 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 48216344 - 48216227
Alignment:
| Q |
104 |
ttgtaactcatcttcttcgcccgttgattgcaaaac--ggatttttgacccgtgaatcgatccggctggatttaccttggcgcacaataaaattcaacga |
201 |
Q |
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||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||| | ||| |||||| ||||||||| |||||||||||||||||| |
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| T |
48216344 |
ttgtaactcatcttcctcgcccgttgattgcaaaaacgggttttttgacccgcgaatcaacccgactggatctaccttggcacacaataaaattcaacga |
48216245 |
T |
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| Q |
202 |
ttattacccaattttgat |
219 |
Q |
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|||||||||||||||||| |
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| T |
48216244 |
ttattacccaattttgat |
48216227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 48223916 - 48223871
Alignment:
| Q |
1 |
agaaggtagcacccaccaaaacagcaaacagaacctgcgaacaaca |
46 |
Q |
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| T |
48223916 |
agaaggcagcacccaccaaaacagcaaacagaacctgcgaacaaca |
48223871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2432 - 2390
Alignment:
| Q |
1 |
agaaggtagcacccaccaaaacagcaaacagaacctgcgaaca |
43 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2432 |
agaaggcagcacccaccaaaacagcaaacagaacctgcgaaca |
2390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9034 - 8992
Alignment:
| Q |
1 |
agaaggtagcacccaccaaaacagcaaacagaacctgcgaaca |
43 |
Q |
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| T |
9034 |
agaaggcagcacccaccaaaacagcaaacagaacctgcgaaca |
8992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17060456 - 17060414
Alignment:
| Q |
1 |
agaaggtagcacccaccaaaacagcaaacagaacctgcgaaca |
43 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17060456 |
agaaggcagcacccaccaaaacagcaaacagaacctgcgaaca |
17060414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 38614394 - 38614504
Alignment:
| Q |
110 |
ctcatcttcttcgcccgttgattgcaaaacggatttt-tgacccgtgaatcgatccggctggatttaccttggcgcacaataaaattcaacgattattac |
208 |
Q |
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||||||||||||||||||||| | ||| ||| | || ||||||| ||||||| ||| |||||| |||||||| |||||| ||||||||||| | |||| |
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| T |
38614394 |
ctcatcttcttcgcccgttgacagtaaaccgggtattgtgacccgcgaatcgacccgactggatctaccttggtacacaatgaaattcaacgagttttac |
38614493 |
T |
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| Q |
209 |
ccaattttgat |
219 |
Q |
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||| ||||||| |
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| T |
38614494 |
ccagttttgat |
38614504 |
T |
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