View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10056_low_36 (Length: 231)
Name: NF10056_low_36
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31941929 - 31941789
Alignment:
| Q |
1 |
aagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31941929 |
aagaagagcatgagaggagaattatcccactgtgaactgcactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgctt |
31941830 |
T |
|
| Q |
101 |
ggtcaaagtattccttccaaccgctccgtctctgcttctcc |
141 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31941829 |
gctcaaagtattccttccaaccgctccgtctctgcttctcc |
31941789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31956160 - 31956020
Alignment:
| Q |
1 |
aagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgctt |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||| |
|
|
| T |
31956160 |
aagaagagtatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtcctcttcaatcaactctttcgctt |
31956061 |
T |
|
| Q |
101 |
ggtcaaagtattccttccaaccgctccgtctctgcttctcc |
141 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
31956060 |
gctcaaagtattcttcccaaccgctccgtctctgcttctcc |
31956020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 31968039 - 31967904
Alignment:
| Q |
1 |
aagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctg---tttcgatcaactctttcg |
97 |
Q |
| |
|
||||||||||| ||||||||||||||| || | |||| ||||| |||||||||||||||||||||||||| |||| | | |||| ||||| |||| |
|
|
| T |
31968039 |
aagaagagcataagaggagaattatccaaccgcgaaccacactccgacggcgaaaaccaccgcggaggtccaccgtcagcaactccgataaactccttcg |
31967940 |
T |
|
| Q |
98 |
cttggtcaaagtattccttccaaccgctccgtctct |
133 |
Q |
| |
|
| || ||||| ||||||||||||||| ||||||||| |
|
|
| T |
31967939 |
catgctcaaaatattccttccaaccggtccgtctct |
31967904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 49789512 - 49789548
Alignment:
| Q |
41 |
actccaacggcgaaaaccaccgcggaggtccatcgtc |
77 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
49789512 |
actccaacggcgataaccaccgcggaggtccaccgtc |
49789548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University