View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10056_low_37 (Length: 213)

Name: NF10056_low_37
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10056_low_37
NF10056_low_37
[»] chr6 (12 HSPs)
chr6 (10-195)||(23266491-23266676)
chr6 (10-195)||(23247548-23247733)
chr6 (17-195)||(23251960-23252138)
chr6 (10-195)||(23257936-23258121)
chr6 (12-195)||(23587078-23587261)
chr6 (12-195)||(23583194-23583377)
chr6 (12-195)||(23391391-23391574)
chr6 (17-195)||(23283609-23283787)
chr6 (11-195)||(23289922-23290106)
chr6 (12-175)||(23634132-23634295)
chr6 (17-178)||(23506949-23507110)
chr6 (27-175)||(23594164-23594312)
[»] chr5 (1 HSPs)
chr5 (120-178)||(3996385-3996443)
[»] chr4 (1 HSPs)
chr4 (120-181)||(41521739-41521800)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 23266676 - 23266491
Alignment:
Q  10 gagcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaa 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23266676 gagcagggaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaa 23266577  T
Q  110 cacgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  23266576 cacgaagactagaatttggctaggaacttttccaacagccgagatggcagcccgagcccacgatgttgctgcgatggcattgaggg 23266491  T

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Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 23247733 - 23247548
Alignment:
Q  10 gagcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaa 109  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||    
T  23247733 gagcagggaggaagatatttaaggaaactcgccacccggtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaa 23247634  T
Q  110 cacgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
    ||| |||| ||| |||||||| ||||||||||||||| | || ||||| ||||||||||| ||||||||||| |||||||||||||    
T  23247633 cacaaagaataggatttggctgggaacttttccaacaccggagatggctgcccgagcccacgatgttgctgcaatggcattgaggg 23247548  T

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Target: chr6; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 23252138 - 23251960
Alignment:
Q  17 gaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaag 116  Q
    |||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||    
T  23252138 gaggaagatatttaaggaaactcgtcaccctgtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaag 23252039  T
Q  117 actagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
    | ||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||| ||||||||||    
T  23252038 aataggatttggctaggaacttttccaacagccgagatggcagcccgagcccacgatgttgccgcgatagcattgaggg 23251960  T

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Target: chr6; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 23258121 - 23257936
Alignment:
Q  10 gagcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaa 109  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  23258121 gagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaa 23258022  T
Q  110 cacgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
    ||| ||||| || |||||||| || |||||||||||| | || ||||||||||||||||| |||||||| || |||||||||||||    
T  23258021 cacaaagaccaggatttggctggggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgaggg 23257936  T

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Target: chr6; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 23587261 - 23587078
Alignment:
Q  12 gcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaaca 111  Q
    |||| ||||||||  |||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23587261 gcagggaggaagaagttcaaggaaactcgccacccagtctatagaggagtgaggaagaggaacttagataaatgggtttgtgaaatgagggagcctaaca 23587162  T
Q  112 cgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
     ||||||||  ||||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||||| |||||||||||||    
T  23587161 agaagactaagatttggctagggacttttccaactgccgagatggcagcccgtgcccacgatgttgctgcaatggcattgaggg 23587078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 23583377 - 23583194
Alignment:
Q  12 gcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaaca 111  Q
    |||| ||||||||  |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  23583377 gcagggaggaagaagttcaaggagactcgccacccggtctataggggtgtaaggaagaggaacttagataaatgggtttgtgaaatgaggaagcctaaca 23583278  T
Q  112 cgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
     ||||||||  ||||||||||| ||||||||||| || || |||||| |||| ||||| ||||||||||| |||||||||||||    
T  23583277 agaagactaagatttggctagggacttttccaactgcggagatggcaacccgtgcccacgatgttgctgcaatggcattgaggg 23583194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 23391574 - 23391391
Alignment:
Q  12 gcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaaca 111  Q
    |||| ||||||||  |||||||| |||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| || || |    
T  23391574 gcagggaggaagaagttcaaggagactcgccacccggtatataggggtgtgaggaaaagaaacttagataaatgggtgtgtgaaatgagggaaccaaata 23391475  T
Q  112 cgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
     |||||||| |||||||||||| ||||||||||| || || |||||||||||||| ||||||||||| || |||||||||||||    
T  23391474 agaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatgatgttgccgcaatggcattgaggg 23391391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 23283787 - 23283609
Alignment:
Q  17 gaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaag 116  Q
    ||||||||  || ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  |||    
T  23283787 gaggaagaagtttaaggagactcgccacccggtgtataggggtgtgaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacaaaaag 23283688  T
Q  117 actagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
    ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| || || ||||| || |||||||| ||||    
T  23283687 actaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgcagccatggcattaaggg 23283609  T

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Target: chr6; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 23290106 - 23289922
Alignment:
Q  11 agcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaac 110  Q
    ||||| ||||||||  || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||     
T  23290106 agcagggaggaagaagtttaaggagactcgccacccggtgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaat 23290007  T
Q  111 acgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgcgatggcattgaggg 195  Q
    | ||||||||| ||||||||||| |||||| ||||||| || ||||| ||||| || || || ||||| || || ||||||||||    
T  23290006 aagaagactaggatttggctagggacttttgcaacagccgagatggctgcccgtgcacacgacgttgcagcaattgcattgaggg 23289922  T

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Target: chr6; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 23634295 - 23634132
Alignment:
Q  12 gcagagaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaaca 111  Q
    |||| ||||||||  |||||||| || |||||||||||||| || ||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  23634295 gcagggaggaagaagttcaaggagacacgccacccggtgtacaggggtgtgaggaggaggaacttagataaatgggtgtgtgaaatgagggagcctaaca 23634196  T
Q  112 cgaagactagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgt 175  Q
     ||||||||  ||||||||||| ||||||||||| || || |||||||| ||||| ||||||||    
T  23634195 agaagactaagatttggctagggacttttccaacggccgagatggcagcacgagcacatgatgt 23634132  T

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Target: chr6; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 23507110 - 23506949
Alignment:
Q  17 gaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaag 116  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| ||||  |||||| ||||||||||||| |||||||| ||  |||| ||||  |||    
T  23507110 gaggaagaaattcaaggaaactcgccacccggtgtataggggtgtgaggagtaggaacctagataaatgggtgtgtgaaataagacagcctaacaaaaag 23507011  T
Q  117 actagaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgc 178  Q
    || |  |||||||||||||||||||||||||| || |||||||| || ||||||||||||||    
T  23507010 accaagatttggctaggaacttttccaacagccgagatggcagctcgggcccatgatgttgc 23506949  T

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Target: chr6; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 23594312 - 23594164
Alignment:
Q  27 ttcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaattt 126  Q
    |||||||  ||| |||||||| | ||||| ||||| ||||  ||||| |||| ||||||||| ||||||||||||||||| |||| || |||||  || |    
T  23594312 ttcaaggtgacttgccacccgatctataggggtgtgaggagtaggaatttaggtaaatgggtgtgtgaaatgagggagcctaacaagatgactaagatat 23594213  T
Q  127 ggctaggaacttttccaacagctgatatggcagcccgagcccatgatgt 175  Q
    ||||||||||||||||||  ||||| |||| ||| ||||||||||||||    
T  23594212 ggctaggaacttttccaatggctgagatggaagcacgagcccatgatgt 23594164  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 3996443 - 3996385
Alignment:
Q  120 agaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgc 178  Q
    |||||||||||||| |||| ||||||| | || |||||||| ||||||||||| |||||    
T  3996443 agaatttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgc 3996385  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 41521739 - 41521800
Alignment:
Q  120 agaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgc 181  Q
    ||||||||||| ||||||||||||||  |||||||||| ||  |||| |||||||| |||||    
T  41521739 agaatttggctcggaacttttccaactcctgatatggctgctagagctcatgatgtggctgc 41521800  T

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