View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_4 (Length: 514)
Name: NF10056_low_4
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Original strand, 40894033 - 40894518
Alignment:
| Q |
12 |
cagagaagaaaaaacagtgcatggggtatttaagtagttgcaatgaatttgtcaagataaatcattggtgttgcaagaatggagacatattgcagactag |
111 |
Q |
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| T |
40894033 |
cagagaagaaaaaacagtgcatggggtatttaagtagttgcaatgaatttgtcaagataaatcattggtgttgcaagaatggagacatattgcagactag |
40894132 |
T |
|
| Q |
112 |
tcaatccctgatcacaattaagaggataatgtggatggtgagagtagtgagaacactgataatagtggataatgacacattggtaagaatgtagttgata |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894133 |
tcaatcgctgatcacaattaagaggataatgtggatggtgagagtagtgagaacactgataatagtggataatgacacattggtaagaatgtagttgata |
40894232 |
T |
|
| Q |
212 |
gagatgaactgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcact |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894233 |
gagatgaactgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcact |
40894332 |
T |
|
| Q |
312 |
tgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaagaagcatgactagaaatattggccaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894333 |
tgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaagaagcatgactagaaatattggccaca |
40894432 |
T |
|
| Q |
412 |
taaaagcataaacacttaatgcagctatcagtttttcggtaggtatcattgttctttctggttgatttcatttgcgtgcttaattt |
497 |
Q |
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| T |
40894433 |
taaaagcataaacacttaatgcagctatcagtttttcggtaggtatcattgttctttctggttgatttcatttgcgtgcttaattt |
40894518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 132 - 436
Target Start/End: Complemental strand, 44155671 - 44155367
Alignment:
| Q |
132 |
agaggataatgtggatggtgagagtagtgagaacactgataatagtggataatgacacattggtaagaatgtagttgatagagatgaactgcactcatgc |
231 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| || |||||||| | ||||||||| ||||||||| || |
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| T |
44155671 |
agaggataatgtggatggtgagagtagtgagaacactgatgatggtggctaatgacacatttgtgagaatgtactcgatagagataaactgcacttatct |
44155572 |
T |
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| Q |
232 |
gatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcacttgac---tggc---ttcaat |
325 |
Q |
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| T |
44155571 |
gatgatcgcattcttttcaaaaaac----tttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaacttgact |
44155476 |
T |
|
| Q |
326 |
agaaaaacctctgctccttcctccaggcacctgcaaatcag--tgagagtaaaactattaagaagcatgactagaaatattggccacataaaagcataaa |
423 |
Q |
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||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
44155475 |
ggaa----ctctgctccttcctccagacacctgcaaatcagagtgagagtaaaactattaagaagcaggactagaaataccggccacataaaagcataaa |
44155380 |
T |
|
| Q |
424 |
cacttaatgcagc |
436 |
Q |
| |
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||||||||||||| |
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| T |
44155379 |
cacttaatgcagc |
44155367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 421
Target Start/End: Complemental strand, 44214746 - 44214434
Alignment:
| Q |
132 |
agaggataatgtggatggtgagagtagtgagaacactgataatagtggat------aatgacacattggtaagaatgtagttgatagagatgaac----- |
220 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||| || || |||||| |||||| ||||||| ||||||||||||||||||||| || |
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| T |
44214746 |
agaggataatgttgatggtgagagtggtgagaacaccgacgatggtggatcacatgaatgacgcattggtgagaatgtagttgatagagatggacatgga |
44214647 |
T |
|
| Q |
221 |
-tgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgc----------- |
308 |
Q |
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| T |
44214646 |
ctacaatcatctgatgatcgcattcttttgagagaaca----tttctcgccatccttcacttcacctctcatgatgaaatctttcaggcgtcttacatct |
44214551 |
T |
|
| Q |
309 |
----acttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaagaagcatgactagaaatatt |
404 |
Q |
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| ||||||||||| || | |||| |||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||| ||| || ||| | |
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| T |
44214550 |
gacaatttgactggctttaacaaaaaatcctctgctccttcctccaaacacctgcaaattagtgaaaataaaactattaagaagcaggacaggatatact |
44214451 |
T |
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| Q |
405 |
ggccacataaaagcata |
421 |
Q |
| |
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|||||| ||| |||||| |
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| T |
44214450 |
ggccacctaatagcata |
44214434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 44146211 - 44146241
Alignment:
| Q |
48 |
gttgcaatgaatttgtcaagataaatcattg |
78 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
44146211 |
gttgcaatgaatttgtcaagataaatcattg |
44146241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 44155860 - 44155830
Alignment:
| Q |
48 |
gttgcaatgaatttgtcaagataaatcattg |
78 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
44155860 |
gttgcaatgaatttgtcaagataaatcattg |
44155830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 497
Target Start/End: Complemental strand, 44154841 - 44154800
Alignment:
| Q |
456 |
atcattgttctttctggttgatttcatttgcgtgcttaattt |
497 |
Q |
| |
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||||||||||| |||| |||||||| |||||||||||||||| |
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| T |
44154841 |
atcattgttctctctgattgatttcgtttgcgtgcttaattt |
44154800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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