View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_6 (Length: 482)
Name: NF10056_low_6
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 50 - 464
Target Start/End: Original strand, 4600200 - 4600614
Alignment:
| Q |
50 |
tgagtacacccttcaacacggcaagaaatagacgagagaaataaaagggaaaaaaccaagtaaaaccttatgaatttacaaatagtgaagggtcattttg |
149 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4600200 |
tgagtacacccttcaacacggtaagaaatagatgagagaaataaaagggaaaaaaccaagtaaaaccttatgaatttacaaatagtgaagggtcaatttg |
4600299 |
T |
|
| Q |
150 |
taacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaacattaagcataa |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4600300 |
taacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaacattaagcataa |
4600399 |
T |
|
| Q |
250 |
gttaggacatgatagttgnnnnnnngcatgataaatgaagaaaaatacaaaggaagggttagttaatttacaggattaagcagtgccttgtagggagaat |
349 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4600400 |
gttaggacatgattgttgaaaaaaagcatgataaatgaagaaaaatacaaaggaagggttagttgatttacaggattaagcagtgccttgtagggagaat |
4600499 |
T |
|
| Q |
350 |
catccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaagattaggatcatacttgttccaaattttccttaaatccttaaaaactag |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4600500 |
catccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaagattaggatcatacttgttccaaattttccttaaatccttaaaaactag |
4600599 |
T |
|
| Q |
450 |
tggcttgtgcttgtt |
464 |
Q |
| |
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| T |
4600600 |
tggcttgtgcttgtt |
4600614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 101 - 464
Target Start/End: Original strand, 4572848 - 4573209
Alignment:
| Q |
101 |
aaaaccaagtaaaaccttatgaatttacaaatagtgaagggtcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgagg |
200 |
Q |
| |
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|||| |||| |||||||||||| |||||| ||| |||| | ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4572848 |
aaaatcaagcaaaaccttatgactttacatata-tgaaag-tcattgtgtaacatacctagtgaattgtcattctgattctcataactgaatgtatgagg |
4572945 |
T |
|
| Q |
201 |
aaagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgatagttgnnnnnnngcatgataaatgaagaaaaatacaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
4572946 |
aaagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgatagtcgaaaaaaagcatgataaatgaagaaaaatacaaa |
4573045 |
T |
|
| Q |
301 |
ggaagggttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaa |
400 |
Q |
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||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
4573046 |
ggaagggttagtttatttacaggattaagcaatgccttgtggggagaatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaa |
4573145 |
T |
|
| Q |
401 |
gattaggatcatacttgttccaaattttccttaaatccttaaaaactagtggcttgtgcttgtt |
464 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
4573146 |
gatttggatcatacttgtcccaaattttccttagatccttacaaactagtggcttgcgcttgtt |
4573209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 106 - 464
Target Start/End: Original strand, 4591808 - 4592180
Alignment:
| Q |
106 |
caagtaaaaccttatgaatttacaaatag-tgaagggtcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaag |
204 |
Q |
| |
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|||| |||||||||||| |||||||||| || || |||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| |||||| |
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| T |
4591808 |
caagcaaaaccttatgagtttacaaatatatgtaga-tcattttgtaccatacctaatgaattgtcattctgactctcataactgaatgtatgcggaaag |
4591906 |
T |
|
| Q |
205 |
attgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatg------------atagttgnnnnnnngcatgataaatgaagaaa |
292 |
Q |
| |
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|||||||||||||||| |||||||| || | ||||||| |||| ||| || |||| || | || || ||||||||||| ||| |
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| T |
4591907 |
attgagttgtatggctgcaataattcattgacacattaatcataggttgggccatgtcacaatatgtgatggctgaaaataagcttgataaatgaaaaaa |
4592006 |
T |
|
| Q |
293 |
aatac--aaaggaagggttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttc |
390 |
Q |
| |
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|||| |||| ||| ||| ||| |||||| ||||||||||| |||||||| ||||||||||||| || |||||||| |||||||||||||||||| || |
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| T |
4592007 |
aatatgtaaagaaagtgttcgtttatttactggattaagcagcgccttgtaaggagaatcatccagcaataatgtgttcgactcattgtaatatcccctc |
4592106 |
T |
|
| Q |
391 |
tcccaaggaagattaggatcatacttgttccaaattttccttaaatccttaaaaactagtggcttgtgcttgtt |
464 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4592107 |
tcccaaggaagattcggatcatacttgtcccaaattttccttaaatccttaaaaactagtggcttgcgcttgtt |
4592180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 303 - 464
Target Start/End: Original strand, 4584275 - 4584436
Alignment:
| Q |
303 |
aagggttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaaga |
402 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||| ||||| || |||||||||||| |||||||||||||||| |
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| T |
4584275 |
aagggttagtttatttacaggattaaggaatgccttgtagggagaatcatccagcagcaacgtgttcgagtcattgtaatatttcttctcccaaggaaga |
4584374 |
T |
|
| Q |
403 |
ttaggatcatacttgttccaaattttccttaaatccttaaaaactagtggcttgtgcttgtt |
464 |
Q |
| |
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| T |
4584375 |
ttcggatcatacttgtcccaaattttccttaaatccttaaaaactagtggcttgcgcttgtt |
4584436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 142 - 253
Target Start/End: Original strand, 4584109 - 4584219
Alignment:
| Q |
142 |
tcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaacatt |
241 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||| ||| | |
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| T |
4584109 |
tcattttgta-catacctaatgaattgtcattctgattctcataactgaatgtatgcggaaagattgagttgtgtggctgcaataattcatcaacacaat |
4584207 |
T |
|
| Q |
242 |
aagcataagtta |
253 |
Q |
| |
|
|| ||||||||| |
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|
| T |
4584208 |
aaccataagtta |
4584219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 4605495 - 4605631
Alignment:
| Q |
307 |
gttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaagattag |
406 |
Q |
| |
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||||||| ||||||||||||||| | ||||||||||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| | |
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| T |
4605495 |
gttagtttatttacaggattaagtaaccccttgtagggagagtcatccaaaagcaatgtatttgattcattgtagtaccccttctcccaaggaagattcg |
4605594 |
T |
|
| Q |
407 |
gatcatacttgttccaaattttccttaaatccttaaa |
443 |
Q |
| |
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|||| ||||| | ||||||||| || | ||||||||| |
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|
| T |
4605595 |
gatcgtacttatcccaaatttttctcagatccttaaa |
4605631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 140 - 260
Target Start/End: Original strand, 4605333 - 4605453
Alignment:
| Q |
140 |
ggtcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaaca |
239 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||| ||| |||| |||||| || |||||||||||||||||||||||||| ||| |||||||||| |
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| T |
4605333 |
ggtcattttgtaccatacctagtgatttgtccttctttttccgataagtgaatgagtgtggaaagattgagttgtatggctacaacaatgtatcaaaaca |
4605432 |
T |
|
| Q |
240 |
ttaagcataagttaggacatg |
260 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
4605433 |
ttaaacataagttaggacatg |
4605453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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