View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10056_low_7 (Length: 475)
Name: NF10056_low_7
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 29004011 - 29004457
Alignment:
| Q |
19 |
tcaagattcttcacatcaacatcagcaagtgtcaaaacactaaccccttgtcgcgctttaagcatcgactgctctctcttcggtaacacattccatttct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
29004011 |
tcaagattcttcacatcaacatcagcaagtgtcaaaacactaaccccttgtcgcgctttaagcatcgattgctctcttttcggtaacacattccatttct |
29004110 |
T |
|
| Q |
119 |
tctgccactcacaaacaagtgctggccctgttgcttctgttagtccataagcatgtgttacatgaaaaccaagtggctcgattttctcaagtagggacgc |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29004111 |
tctgccactcacaaactagtgctggccctgttgcctcagttagtccataagcatgtgttacatgaaaaccaagtggctcgattttctcaagtagggacgc |
29004210 |
T |
|
| Q |
219 |
cgggggtggcgctccaccggttagtatatttaccggagattttatgactcttttttcgcttggtttcgcgcctaaaataatattgaaaatgatcggtgcg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29004211 |
cgggggtggcgctccaccggttagtatatttaccggagattttatgactctcttttcgcttggtttcgcgcctaaaataatattgaaaatgatcggtgcg |
29004310 |
T |
|
| Q |
319 |
caacacatgtgtgtcacattatagagatttatagctctatatatatcagatgctgcagtgtttctgatacaaatgtttgtacctcctcttgcagctacac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29004311 |
caacacatgtgtgtcacattatagagatttatagctctatatatatcagatgctgcagtgtttctgatacaaatgtttgtacctcctcttgcagctacac |
29004410 |
T |
|
| Q |
419 |
cccaagtgaatgtccaaccattacaatggaacataggtgatgtccat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29004411 |
cccaagtgaatgtccaaccattacaatggaacataggtaatgtccat |
29004457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University