View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10056_low_8 (Length: 471)
Name: NF10056_low_8
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10056_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 225 - 471
Target Start/End: Complemental strand, 41734771 - 41734525
Alignment:
| Q |
225 |
atgagtttcactgtgtttacatttttcttggtttcatgtcaccaaaaatacatccatgatttgaagttgtggcctgattccgattcgtatgttacggtca |
324 |
Q |
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| T |
41734771 |
atgagtttcactatgtttacatttttcttggtttcatgtcaccaaaaatacatccatgatttgaagttgtggcctgattccgattcgtatgttacagtca |
41734672 |
T |
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| Q |
325 |
acccaaaactcaataaatgacacaaaacacggttctaatcatctctataatataataatattgagttgttagagatacatttaaaactaagtgaataatg |
424 |
Q |
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| T |
41734671 |
acccaaaactcaataaatgacacaaaacacggttctaatcatctctataatataataatattgagttgttagagatacatttaaaactaagtgaataatg |
41734572 |
T |
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| Q |
425 |
ttagaaatgcattttgatagcaaactcaaacagaaggacaaacttat |
471 |
Q |
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| T |
41734571 |
ttagaaatgcattttgataacaaactcaaacagaaggacaaacttat |
41734525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 41736109 - 41735892
Alignment:
| Q |
17 |
accacttacaatcttacatattaaaagttttagtgaaaacaatatatgtggcaagattaatgaaacattaa-caattcccgaaagtgtacttaaaaatag |
115 |
Q |
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| T |
41736109 |
accacttacaatcttacatattaaaagttttagtgaaaacaatatatgtggcaagattaatgaaacattaaacaatttccgaaagtgtacttaaaaatag |
41736010 |
T |
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| Q |
116 |
aatacgatgcatttaaaattgtagatttccaaatggcttgtcaatatttatccaatgttcgcatcaaaggttttgctaaacaaatgaaaatatgtttatg |
215 |
Q |
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| T |
41736009 |
aatacgatgcatttaaaattgtagatttgcaaatgacttgtcaatatttatccaatgttcgcatcaaaggttttgctaaacaaatgaaaatatgtttatg |
41735910 |
T |
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| Q |
216 |
ctttacataatgagtttc |
233 |
Q |
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| T |
41735909 |
ctttacataatgagtttc |
41735892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 80 - 310
Target Start/End: Complemental strand, 4600165 - 4599935
Alignment:
| Q |
80 |
aacattaacaattcccgaaagtgtact-taaaaatagaatacgatgcatttaaaattgtagatttccaaatggcttgtcaatatttatccaatgttcgca |
178 |
Q |
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| T |
4600165 |
aacattcacaattcccgaaagtgtactctcgaaatagaatacgatgcattcaaaattgtggaaatgcaaatagcttgtcaatatttgtccgatgttc--a |
4600068 |
T |
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| Q |
179 |
tcaaaggttttgctaaacaaatgaaaatatgtttatgctttacataatgagtttcactgtgtt--tacatttttcttggtttcatgtcaccaaaaataca |
276 |
Q |
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| T |
4600067 |
taaaaggttttgctaagcaaatgaaaacatgtttatgctttacatgacaagtttcactatgtttctacatttttcttggtttcatgtcaccaaaaataca |
4599968 |
T |
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| Q |
277 |
tccatgatttgaagttgtggcctgattccgattc |
310 |
Q |
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| T |
4599967 |
tatatg-gttgaagttgtggcctggttctgattc |
4599935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 4599911 - 4599871
Alignment:
| Q |
321 |
gtcaacccaaaactcaataaatgacacaaaacacggttcta |
361 |
Q |
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| T |
4599911 |
gtcaacccaaaactcaataaatgacaaaagagacggttcta |
4599871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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