View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10056_low_9 (Length: 449)

Name: NF10056_low_9
Description: NF10056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10056_low_9
NF10056_low_9
[»] chr4 (12 HSPs)
chr4 (18-441)||(39081971-39082394)
chr4 (18-213)||(39087853-39088048)
chr4 (18-224)||(39091233-39091439)
chr4 (18-234)||(39070774-39070990)
chr4 (239-343)||(39086809-39086913)
chr4 (18-187)||(39097556-39097725)
chr4 (19-58)||(7615241-7615280)
chr4 (122-219)||(39080265-39080362)
chr4 (19-58)||(7637055-7637094)
chr4 (266-313)||(39089992-39090039)
chr4 (20-58)||(7656227-7656265)
chr4 (123-188)||(39075094-39075159)
[»] scaffold0190 (1 HSPs)
scaffold0190 (19-155)||(4356-4492)
[»] chr8 (2 HSPs)
chr8 (19-89)||(15745030-15745100)
chr8 (67-118)||(15196291-15196342)
[»] chr7 (1 HSPs)
chr7 (19-63)||(8936181-8936225)
[»] chr3 (1 HSPs)
chr3 (19-52)||(40147454-40147487)
[»] chr6 (1 HSPs)
chr6 (19-55)||(6500493-6500529)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 39082394 - 39081971
Alignment:
Q  18 aggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082394 aggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg 39082295  T
Q  118 gagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39082294 gagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagttcttggttcctagttctaagta 39082195  T
Q  218 atctgactggtattttttctggctatttacaatttttctggtctgaaattgtttaggatatgcttgagtgaacaatatttaaggatatgtcactttgctg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39082194 atctgactggtattttttctggctatttacaatttttctggtctgaaattgtttaggatatgcttgggtgaacaatatttaaggatatgtcactttgctg 39082095  T
Q  318 tttcaattatttggttactacttgtttgtactagtttgttccatatttttgtatttaaaagcttctactaaagtaatatgttcgagaacttcgtcccagt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39082094 tttcaattatttggttactacttgtttgtactagtttgttccatattgttgtatttaaaagcttctactaaagtaatatgttcgagaacttcttcccagt 39081995  T
Q  418 tacaattcttaatatatctctgct 441  Q
    ||||||||||||||||||| ||||    
T  39081994 tacaattcttaatatatctttgct 39081971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 39088048 - 39087853
Alignment:
Q  18 aggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg 117  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||| |||||    
T  39088048 aggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaaagtaatgggaagattactgtgtttgctg 39087949  T
Q  118 gagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttcta 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||| |||| | |||||||||||||||    
T  39087948 gagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatggttcctagttcta 39087853  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 39091439 - 39091233
Alignment:
Q  18 aggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg 117  Q
    |||||||||||||| |||||||||||||||||||||||||| || |||||| || | || ||| | ||||| | |||||| |||||||| |||| |||||    
T  39091439 aggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggttagatgcggaggtgcgaataagaataatggaaagattaccgtgtttgctg 39091340  T
Q  118 gagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagta 217  Q
    | | ||||||||||||||| ||| ||||||||||||||||||  ||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  39091339 gggttgaagaaggtagcatagatgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagta 39091240  T
Q  218 atctgac 224  Q
    || ||||    
T  39091239 atgtgac 39091233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 39070990 - 39070774
Alignment:
Q  18 aggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg 117  Q
    ||||||||||||| ||| ||||||||||| ||||| ||||| || | ||||||||||||| ||   ||||| | |||||| || |||| ||| | |||||    
T  39070990 aggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgggagtggtaataagaataatggaaaaattagtgtttttgctg 39070891  T
Q  118 gagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagta 217  Q
    | |||||||||||||| || ||| ||||| ||||||||||||  ||||| ||||||||||||| ||||||||  |||| ||||||||| | |||||||||    
T  39070890 gtgctgaagaaggtagtatagatgttgaaatttgtctttcttatgagattttggaggctttggcaaatgatgttgagttcttggttccaatttctaagta 39070791  T
Q  218 atctgactggtattttt 234  Q
    || ||||| ||| ||||    
T  39070790 atgtgacttgtaatttt 39070774  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 39086913 - 39086809
Alignment:
Q  239 gctatttacaatttttctggtctgaaattgtttaggatatgcttgagtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactac 338  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| || |||||||||||||||||||||| ||||    
T  39086913 gctatttacattttttctggtctgaaattgtttaggatatgcttgtttgaacaataattaaggatatgttacattgctgtttcaattatttggtttctac 39086814  T
Q  339 ttgtt 343  Q
    |||||    
T  39086813 ttgtt 39086809  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 39097725 - 39097556
Alignment:
Q  18 aggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctg 117  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || |  ||| ||||||||||| ||||||||||| |||| | ||| ||| ||| |  ||    
T  39097725 aggtttgatgtttatggtaatgactttggttggggtaagcctgttgctgttagaagtgggggtgcaaataaaagtgatggaacgataactatgtttagtg 39097626  T
Q  118 gagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatga 187  Q
    |    ||||||||||| |||||| |||||||||| |||||||  || || ||||||||| ||||||||||    
T  39097625 ggatagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatga 39097556  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 7615280 - 7615241
Alignment:
Q  19 ggtttgatgtttatggtaatgattttggttgggggaagcc 58  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  7615280 ggtttgatgtttatggtaatgattttggttggggaaagcc 7615241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 39080362 - 39080265
Alignment:
Q  122 tgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaat 219  Q
    |||||||||||| ||  || ||||  ||||||||||||  || || ||||||||||||||||||||| | |||| | |||||||  ||||||||||||    
T  39080362 tgaagaaggtagtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaat 39080265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 7637094 - 7637055
Alignment:
Q  19 ggtttgatgtttatggtaatgattttggttgggggaagcc 58  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  7637094 ggtttgatgtttatggtaatgattttggatggggaaagcc 7637055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 39090039 - 39089992
Alignment:
Q  266 ttgtttaggatatgcttgagtgaacaatatttaaggatatgtcacttt 313  Q
    ||||||| |||||||||  ||||||||| |||||||||||||||||||    
T  39090039 ttgtttaagatatgcttaggtgaacaatgtttaaggatatgtcacttt 39089992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 7656227 - 7656265
Alignment:
Q  20 gtttgatgtttatggtaatgattttggttgggggaagcc 58  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcc 7656265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 39075159 - 39075094
Alignment:
Q  123 gaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgat 188  Q
    |||||||||||  |||||||| ||||||||||| |||  || || ||||||||| |||||||||||    
T  39075159 gaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatgat 39075094  T

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Target: scaffold0190 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 4492 - 4356
Alignment:
Q  19 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctgg 118  Q
    |||||||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||| ||||||  ||||||||| ||    
T  4492 ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaagatttatgtgtatgcagg 4393  T
Q  119 agctgaagaaggtagcattgatattgaagtttgtctt 155  Q
     |  ||||| |||||||| ||  ||||||| ||||||    
T  4392 tgtagaagatggtagcatggaccttgaagtatgtctt 4356  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 15745030 - 15745100
Alignment:
Q  19 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaa 89  Q
    |||||||||||||||| ||||||||||||||||| || || || |||||||||| ||||||| ||||||||    
T  15745030 ggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcgaactgggggtgcaaataaa 15745100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 15196291 - 15196342
Alignment:
Q  67 ttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctgg 118  Q
    ||||||||||  ||||||||||||||||||| ||||||| ||||| ||||||    
T  15196291 ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctgg 15196342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 8936181 - 8936225
Alignment:
Q  19 ggtttgatgtttatggtaatgattttggttgggggaagccggtag 63  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||    
T  8936181 ggtttgatgtttatggtaatgattttggatggggaaagcctgtag 8936225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 40147454 - 40147487
Alignment:
Q  19 ggtttgatgtttatggtaatgattttggttgggg 52  Q
    |||||||||||||||||||||||||||| |||||    
T  40147454 ggtttgatgtttatggtaatgattttggatgggg 40147487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6500529 - 6500493
Alignment:
Q  19 ggtttgatgtttatggtaatgattttggttgggggaa 55  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  6500529 ggtttgatatttatggtaatgattttggatgggggaa 6500493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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