View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10057_high_3 (Length: 514)

Name: NF10057_high_3
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10057_high_3
NF10057_high_3
[»] chr7 (2 HSPs)
chr7 (18-301)||(29963016-29963302)
chr7 (374-420)||(29962891-29962937)
[»] chr2 (2 HSPs)
chr2 (240-301)||(6487989-6488050)
chr2 (371-465)||(6488165-6488261)
[»] chr1 (2 HSPs)
chr1 (240-301)||(46152721-46152782)
chr1 (385-465)||(46152911-46152993)
[»] chr5 (4 HSPs)
chr5 (240-301)||(2913515-2913576)
chr5 (385-465)||(2913703-2913785)
chr5 (240-293)||(9762475-9762528)
chr5 (240-280)||(28812572-28812612)
[»] chr8 (1 HSPs)
chr8 (385-465)||(9232190-9232272)
[»] chr4 (6 HSPs)
chr4 (385-465)||(16901894-16901976)
chr4 (385-465)||(18350494-18350576)
chr4 (240-280)||(16901686-16901726)
chr4 (240-280)||(18350286-18350326)
chr4 (258-301)||(16901722-16901765)
chr4 (258-301)||(18350322-18350365)
[»] scaffold0689 (2 HSPs)
scaffold0689 (251-301)||(555-605)
scaffold0689 (385-465)||(710-792)
[»] chr3 (1 HSPs)
chr3 (240-277)||(45802841-45802878)
[»] chr6 (1 HSPs)
chr6 (397-458)||(27158568-27158631)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 29963302 - 29963016
Alignment:
Q  18 acatatctatagtgtcttactttaagtgttaattaatttatgcatatttagagctttttctaatgcttgatgtgcataaatagttagatgagctgggttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  29963302 acatatctatagtgtcttactttaagtgttaattaatttatgcatatgtagtgctttttctaatgcctgatatgcataaatagttaggtgagctgggttt 29963203  T
Q  118 ctaattaatctagctatgatttcatttcttttatttattcatgcatttgtaggactttttctaatg---tattgttttcgattgtaatgttgttgtccta 214  Q
    | |||||||||||||||||||||||||||||||||| ||||||||| |||||  ||||||||||||   |||||||||||||||||||| | ||||||||    
T  29963202 ccaattaatctagctatgatttcatttcttttattttttcatgcatatgtagtgctttttctaatgtattattgttttcgattgtaatggttttgtccta 29963103  T
Q  215 tatatatggacagctaactctatttcatatgaatgcatattcgattgattggtctaaggttattgacaaaaaagatttgtcttagtc 301  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  29963102 tatatatggacagctaactctatttcatatgaatgcatatttgattgattggtctaagtttattgataaaaaagatttgtcttagtc 29963016  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 29962937 - 29962891
Alignment:
Q  374 taatagccattttcataggtccaagatccacatgtatgaattgaaac 420  Q
    ||||| |||| ||||| |||||||| |||||||||||||||||||||    
T  29962937 taatatccatgttcatcggtccaagctccacatgtatgaattgaaac 29962891  T

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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 6487989 - 6488050
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttattgacaaaaaagatttgtcttagtc 301  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6487989 catatgaatgcatattcgattgattggtctgaggttattgacaaaaaagatttgtctaagtc 6488050  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 6488165 - 6488261
Alignment:
Q  371 cgataatagccattttcataggtccaagatccacatgtatgaattgaaacgtcggaatgatccact--gaattcagttgttagaagcaatagatctt 465  Q
    |||||||| || | ||||||||||| |||||||| |||||||||||||||||| ||||||||||||  | | ||||||||||||| |||||| ||||    
T  6488165 cgataatatccctgttcataggtccgagatccacgtgtatgaattgaaacgtccgaatgatccactcgggaatcagttgttagaatcaataggtctt 6488261  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 46152721 - 46152782
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttattgacaaaaaagatttgtcttagtc 301  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  46152721 catatgaatgcatattcgattgattggtctgaggttattgacaaaaaagatttgtctaagtc 46152782  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 46152911 - 46152993
Alignment:
Q  385 ttcataggtccaagatccacatgtatgaattgaaacgtcggaatgatccact--gaattcagttgttagaagcaatagatctt 465  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||||  | | ||||||||||||| |||||| ||||    
T  46152911 ttcataggtccgagatccacgtgtatgaattgaaacgtccgaatgatccactcgggaatcagttgttagaatcaataggtctt 46152993  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 2913515 - 2913576
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttattgacaaaaaagatttgtcttagtc 301  Q
    |||||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||    
T  2913515 catatgaatgcatattcgattgattgatatgaggttattgacaaaaaagatttgtctaagtc 2913576  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 2913703 - 2913785
Alignment:
Q  385 ttcataggtccaagatccacatgtatgaattgaaacgtcggaatgatccact-ga-attcagttgttagaagcaatagatctt 465  Q
    ||||||||||| |||||||| | |||||||||||||||| |||||||||||| || | ||||||||||||| |||||| ||||    
T  2913703 ttcataggtccgagatccacgtttatgaattgaaacgtccgaatgatccactcgagaatcagttgttagaatcaataggtctt 2913785  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 9762475 - 9762528
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttattgacaaaaaagatttg 293  Q
    ||||||||||||||||||||| ||| || | |||||||||||||||||||||||    
T  9762475 catatgaatgcatattcgattaattagtatgaggttattgacaaaaaagatttg 9762528  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 28812572 - 28812612
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttattga 280  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  28812572 catatgaatgcatattcgattgattggtctgaggttattga 28812612  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 465
Target Start/End: Complemental strand, 9232272 - 9232190
Alignment:
Q  385 ttcataggtccaagatccacatgtatgaattgaaacgtcggaatgatccact--gaattcagttgttagaagcaatagatctt 465  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||||  | | ||||||||||||| |||||| ||||    
T  9232272 ttcataggtccgagatccacgtgtatgaattgaaacgtccgaatgatccactcgggaatcagttgttagaatcaataggtctt 9232190  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 16901894 - 16901976
Alignment:
Q  385 ttcataggtccaagatccacatgtatgaattgaaacgtcggaatgatccact--gaattcagttgttagaagcaatagatctt 465  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||||  | | ||||||||||||| |||||| ||||    
T  16901894 ttcataggtccgagatccacgtgtatgaattgaaacgtccgaatgatccactcgggaatcagttgttagaatcaataggtctt 16901976  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 18350494 - 18350576
Alignment:
Q  385 ttcataggtccaagatccacatgtatgaattgaaacgtcggaatgatccact--gaattcagttgttagaagcaatagatctt 465  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||||  | | ||||||||||||| |||||| ||||    
T  18350494 ttcataggtccgagatccacgtgtatgaattgaaacgtccgaatgatccactcgggaatcagttgttagaatcaataggtctt 18350576  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 16901686 - 16901726
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttattga 280  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  16901686 catatgaatgcatattcgattgattggtctgaggttattga 16901726  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 18350286 - 18350326
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttattga 280  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  18350286 catatgaatgcatattcgattgattggtctgaggttattga 18350326  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 16901722 - 16901765
Alignment:
Q  258 attgattggtctaaggttattgacaaaaaagatttgtcttagtc 301  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  16901722 attgattggtctgaggttattgacaaaaaagatttgtctaagtc 16901765  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 18350322 - 18350365
Alignment:
Q  258 attgattggtctaaggttattgacaaaaaagatttgtcttagtc 301  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  18350322 attgattggtctgaggttattgacaaaaaagatttgtctaagtc 18350365  T

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Target: scaffold0689 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 555 - 605
Alignment:
Q  251 atattcgattgattggtctaaggttattgacaaaaaagatttgtcttagtc 301  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  555 atattcgattgattggtctgaggttatcgacaaaaaagatttgtctaagtc 605  T

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Target: scaffold0689; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 710 - 792
Alignment:
Q  385 ttcataggtccaagatccacatgtatgaattgaaacgtcggaatgatccac--tgaattcagttgttagaagcaatagatctt 465  Q
    ||||||||||  |||||||||| |||||||||||| ||| |||||||| ||  || | ||||||||||||| |||||| ||||    
T  710 ttcataggtctgagatccacatctatgaattgaaaggtccgaatgatcaactttgcaatcagttgttagaatcaataggtctt 792  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 45802878 - 45802841
Alignment:
Q  240 catatgaatgcatattcgattgattggtctaaggttat 277  Q
    |||||||||||||||||||||||||||||  |||||||    
T  45802878 catatgaatgcatattcgattgattggtcggaggttat 45802841  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 27158631 - 27158568
Alignment:
Q  397 agatccacatgtatgaattgaaacgtcggaatgatccact--gaattcagttgttagaagcaat 458  Q
    |||||||||||||||||||||||| || ||||||| ||||  | | ||||||||||||| ||||    
T  27158631 agatccacatgtatgaattgaaacatccgaatgatgcactcaggaatcagttgttagaatcaat 27158568  T

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