View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10057_high_4 (Length: 501)

Name: NF10057_high_4
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10057_high_4
NF10057_high_4
[»] chr1 (3 HSPs)
chr1 (319-485)||(19734796-19734962)
chr1 (319-485)||(19730412-19730578)
chr1 (319-363)||(5845343-5845387)
[»] chr7 (1 HSPs)
chr7 (380-475)||(19854962-19855059)
[»] chr2 (2 HSPs)
chr2 (120-169)||(33857627-33857676)
chr2 (1-93)||(41048554-41048646)
[»] chr5 (1 HSPs)
chr5 (319-362)||(40915369-40915412)
[»] chr4 (2 HSPs)
chr4 (2-66)||(22901367-22901431)
chr4 (2-66)||(22953035-22953099)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 319 - 485
Target Start/End: Complemental strand, 19734962 - 19734796
Alignment:
Q  319 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19734962 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgataatatccctcaattactctaaaattattttatcattatgt 19734863  T
Q  419 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatctg 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19734862 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatctg 19734796  T

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Target: chr1; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 319 - 485
Target Start/End: Complemental strand, 19730578 - 19730412
Alignment:
Q  319 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt 418  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19730578 taaaggagtaatatcttagtcattcatgctgcaatacttttgcaataaaactcagttgacaatatcccttaattactctaaaattattttatcattatgt 19730479  T
Q  419 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatctg 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19730478 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtattgtgcatctg 19730412  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 5845387 - 5845343
Alignment:
Q  319 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaa 363  Q
    |||||||||||||| || |||||| ||||||||||| ||||||||    
T  5845387 taaaggagtaatatttttgtcattaatggtgcaatatttttgcaa 5845343  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 380 - 475
Target Start/End: Complemental strand, 19855059 - 19854962
Alignment:
Q  380 atatccctcaattactctaaaattattttatcattatgtgt--catttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtac 475  Q
    ||||| ||||||||||||||||||||  |||||||||||||  ||||| |||||||||||||||||||||| |||| ||||||||||| | |||||||    
T  19855059 atatcactcaattactctaaaattatcctatcattatgtgtatcatttgtttgtaataacttgtaattagtttacatgctcctagcttttccttgtac 19854962  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 33857676 - 33857627
Alignment:
Q  120 gtacatgttggaaattttgtagaataaaatccatttgactacgctacttt 169  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33857676 gtacatgttggaatttttgtagaataaaatccatttgactacgctacttt 33857627  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 41048646 - 41048554
Alignment:
Q  1 cgtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaactgagggaaaagtctaacgtgtattcctt 93  Q
    |||||||||  ||||||| ||||| || |||||||| ||||||||||||||| |||||||||||||||  ||||| ||  |||| ||||||||    
T  41048646 cgtgagcacggctgtcaaggggagttttgggtaccttgatccagagtatttcaggaggcaacaactgacagaaaaatcagacgtatattcctt 41048554  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 40915412 - 40915369
Alignment:
Q  319 taaaggagtaatatcttagtcattcatggtgcaatacttttgca 362  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  40915412 taaaggagtaatatcttagtcattgatggtgcaatacttttgca 40915369  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 22901431 - 22901367
Alignment:
Q  2 gtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaact 66  Q
    ||||||||| ||||||| ||||| ||||| ||||| ||||| || |||||| | |||||||||||    
T  22901431 gtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaact 22901367  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 22953099 - 22953035
Alignment:
Q  2 gtgagcacaactgtcaatgggaggttcgggtacctcgatccagagtatttccggaggcaacaact 66  Q
    ||||||||| ||||||| ||||| ||||| ||||| ||||| || |||||| | |||||||||||    
T  22953099 gtgagcacagctgtcaaagggagtttcggctaccttgatccggaatatttcagaaggcaacaact 22953035  T

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