View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10057_high_6 (Length: 319)
Name: NF10057_high_6
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 40514036 - 40514214
Alignment:
| Q |
14 |
aagaaaaaattggttaatgtattgtggccacaaatatcgatgatggtaacgcgctaaggcaattagcactctattcttattctgatcaaataccaatatt |
113 |
Q |
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| T |
40514036 |
aagaaaaaattggttaatgtattgtggccacaaatatcgatgatggtaacgcactaaggcaattagcactctattcttattctgttcaaataccaatatt |
40514135 |
T |
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| Q |
114 |
cgaacaagaacgtgtaaaagcattttagaacac-atagttgaagcaagaaaatgcaaatgagcaaaagcttcatatata |
191 |
Q |
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| T |
40514136 |
cgaacaagaacgtgtaaaagcattttagaacactatagttgaagcaagaaaatgcaaatgagcaaaagcttcatatata |
40514214 |
T |
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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 40514235 - 40514320
Alignment:
| Q |
215 |
acaacaaaataagtttcttacatatatacaccaacaaaaaatggaaggagcaccaattaaagtgagaaatattccaaagcatttcc |
300 |
Q |
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| T |
40514235 |
acaacaaaataagtttcttacatatatacaccaacaaaaaatggaaggagcaccaattaaagtgagaaatattccaaagcatttcc |
40514320 |
T |
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