View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10057_high_9 (Length: 251)
Name: NF10057_high_9
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 35455071 - 35455240
Alignment:
| Q |
1 |
agcaaggatgagaaaactatgtcaaagacaatgatgggaatgtaacaatatcatcatttttcttcttatatgctt-gcaaaaagatgttcaagatgatga |
99 |
Q |
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| T |
35455071 |
agcaaggatgagaaaactatgtcaaagacaatgatgggaatgtaacaatatcatcctttttcttcttatatgctttgcaaaaagatgttcaagatgatga |
35455170 |
T |
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| Q |
100 |
gcatggaacaaggaggatatggaaaattacaaaatacaccttcttgtattgtcacatgtctatttaatgc |
169 |
Q |
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| T |
35455171 |
gcatggaacaaggaggatatggaaaattacaaaatacaccttcttgtattgtcacatgtctatttaatgc |
35455240 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 35455337 - 35455406
Alignment:
| Q |
165 |
aatgcactatatctctgcattaaattcgcaaatttaattactacaacttcaaagcattttgataagcata |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
35455337 |
aatgcactatatctctgcattaaattcgcaaatttaattactacaatttaaaagcattttgataagcata |
35455406 |
T |
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