View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10057_low_10 (Length: 287)
Name: NF10057_low_10
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 37510694 - 37510478
Alignment:
| Q |
4 |
tggagaagcagagagagtttatgggctaactcaatgcacaagagacatttctagtgttgattgtaagaagtgtcttgatggtgcaattagtgaacttcca |
103 |
Q |
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| T |
37510694 |
tggagaatcagagagagtttatgggctaactcaatgcactagagacatttctagtgttgattgtaagaagtgtcttgatggtgcaattagtgaacttcca |
37510595 |
T |
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| Q |
104 |
aattgttgtgatggnnnnnnnggaggcagagttgttggtggaagttgcaatattcgatatgaaatttaccctttcgttagggagtaaactccaactttgt |
203 |
Q |
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| T |
37510594 |
aattgttgtgatggaaaaaaaggaggcagagttgttggtggaagttgcaatattcgatatgaaatttaccctttcgttagggagtaaactccaactttgg |
37510495 |
T |
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| Q |
204 |
atatattaagttatcat |
220 |
Q |
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| T |
37510494 |
atatattaagttatcat |
37510478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 37531179 - 37531332
Alignment:
| Q |
21 |
tttatgggctaactcaatgcacaagagacatttctagtgttgattgtaagaagtgtcttgatggtgcaattagtgaacttccaaattgttgtgatggnnn |
120 |
Q |
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| T |
37531179 |
tttatgggttaactcagtgcactagagacctttctagtgctgattgcaagaattgtcttgatgctgcaattaatgaacttcgaaattgttgtgatggaaa |
37531278 |
T |
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| Q |
121 |
nnnnggaggcagagttgttggtggaagttgcaatattcgatatgaaatttaccc |
174 |
Q |
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| T |
37531279 |
agaaggaggtagagttgttgggggaagctgcaactttcgatatgagatataccc |
37531332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 37534578 - 37534676
Alignment:
| Q |
52 |
ttctagtgttgattgtaagaagtgtcttgatggtgcaattagtgaacttccaaattgttgtgatggnnnnnnnggaggcagagttgttggtggaagttg |
150 |
Q |
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| T |
37534578 |
ttctagtattgattgtaagaagtgtcttgatgatgcaattaatgaacttccaaattgttgtgatggaaaagaaggaggtagagttgttggtggaagttg |
37534676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 37510447 - 37510415
Alignment:
| Q |
255 |
aaagaagtatatattatacatgttttgtgatca |
287 |
Q |
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| T |
37510447 |
aaagaagtatatattatacatgttttgtgatca |
37510415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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