View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10057_low_16 (Length: 218)
Name: NF10057_low_16
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24368825 - 24369034
Alignment:
| Q |
1 |
tttacatgtaaacaccagtcatactgcccaaaatgacgtggcctacatggatcagtcttgaccaatcattcacgcgagtaatgtgtcagtctttccactg |
100 |
Q |
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|||||||||||| |||| |||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
24368825 |
tttacatgtaaataccaatcatactgtccaaaatgatgtggactacgtggatcagtcttgaccaatcattcacgtgagtaatgtgttagtctttccactc |
24368924 |
T |
|
| Q |
101 |
tgagggatccatgacaccccac-----acttgcattttttcacttcgctgcatgatccgttgacaaagtccacatgtgtgtaagtctccactcaatgtgc |
195 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | || |
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| T |
24368925 |
tgagggatccatgacaccccacgtttgacttgcattttttcacttcgctgcatgatccgttgacaaagttcacatgtgtgtaagtctctactcaacgcgc |
24369024 |
T |
|
| Q |
196 |
ctctgtgctc |
205 |
Q |
| |
|
|||||||||| |
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|
| T |
24369025 |
ctctgtgctc |
24369034 |
T |
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