View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10057_low_18 (Length: 203)
Name: NF10057_low_18
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 6894396 - 6894563
Alignment:
| Q |
13 |
gaagcagagaagtatatatgcaatcctctttcaggggaagtaccaatggaatgtttatctgcaaaaactcttagtggaagattatttcaaaactcaacaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6894396 |
gaagcagagaagtatatatgcaatcctctttcaggggaagtaccaatggaatgtttatctgcaaaaactcttagtggaagattatttcaaaactcaacaa |
6894495 |
T |
|
| Q |
113 |
caaataaaatcaccatgtcagctcctttagtcttttcagcaagacaaattcaaacaaaggcaatggct |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6894496 |
caaataaaatcaccatgtcagctcctttagtcttttcatcaagacaaattcaaacaaaggcaatggct |
6894563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 5939478 - 5939379
Alignment:
| Q |
13 |
gaagcagagaagtatatatgcaatcctctttcaggggaagtaccaatggaatgtttatctgcaaaaactcttagtggaagattatttcaaaactcaacaa |
112 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
5939478 |
gaagcagaaaaatatatatgcaatccactttcaggggaggtgccaatggaatgtttatcagcaaaaactcttagtggaagatcattcagaaactcaacaa |
5939379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University