View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10057_low_2 (Length: 644)
Name: NF10057_low_2
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 37 - 437
Target Start/End: Complemental strand, 32288454 - 32288054
Alignment:
| Q |
37 |
ctaagcactaaaaatactatagctagctatgacccatgaccttatatatcaatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttc |
136 |
Q |
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| T |
32288454 |
ctaagcactaataatactatagctagctatgacccatgaccttatatatcaatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttc |
32288355 |
T |
|
| Q |
137 |
attccagcattgccacctgcagcaccaccgccgccgccgcccatatttgcttcttgtccaccctgtcctccaccagcatttgcatcgccaaatccaggag |
236 |
Q |
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| T |
32288354 |
attccagtattgccacctgcagcaccaccgccgccgccacccatatttgcttcttgtccactctgtcctccaccagcatttgcatcgccaaatccaggag |
32288255 |
T |
|
| Q |
237 |
cagcagtgccatatacagcagtgtattcataccttgaggtggtggtgccatcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgc |
336 |
Q |
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| T |
32288254 |
cagcagtgccatatacagcagtgtattcataccttgaggtggtggtgccatcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgc |
32288155 |
T |
|
| Q |
337 |
ggctactggttccgtaacaccactttggaatgcatcgctcttctgaatatctttttcactatcgcccgttctaggaagattttgaaattgatcgttaggg |
436 |
Q |
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| T |
32288154 |
ggctactggttccgtaacaccactttggaatgcatcgctcttccgaatatctttttcactatcgtccgttcttgaaagattttgaaattgatcgttaggg |
32288055 |
T |
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| Q |
437 |
c |
437 |
Q |
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| T |
32288054 |
c |
32288054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 481 - 626
Target Start/End: Complemental strand, 32288025 - 32287880
Alignment:
| Q |
481 |
tgtataaattcggcgagtgtgagataatgcgatgttattatatggatcaattcatattcaaaggaaatgcattatatatacttgagaggttaattaagcg |
580 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
32288025 |
tgtataaattcggcgagtgtgagatcatgcgatgttattatatggatcaattcatattcaagggaaaggcattatatatacttgagaggttaattaagcg |
32287926 |
T |
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| Q |
581 |
gtgagtgaggagtagcattgatgccaccgtggcttatacagcatct |
626 |
Q |
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| T |
32287925 |
gtgagtgaggagtagcattgatgccaccgtggcttatacagcatct |
32287880 |
T |
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