View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10057_low_3 (Length: 530)

Name: NF10057_low_3
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10057_low_3
NF10057_low_3
[»] chr6 (8 HSPs)
chr6 (14-513)||(5579527-5580033)
chr6 (126-192)||(10031555-10031621)
chr6 (145-194)||(6751888-6751937)
chr6 (147-194)||(19369823-19369870)
chr6 (128-181)||(2140500-2140553)
chr6 (146-194)||(22745962-22746010)
chr6 (146-181)||(29959180-29959215)
chr6 (127-181)||(17168880-17168934)
[»] chr7 (10 HSPs)
chr7 (323-488)||(5018125-5018290)
chr7 (125-193)||(5937428-5937496)
chr7 (136-193)||(9050140-9050197)
chr7 (147-194)||(1885579-1885626)
chr7 (148-193)||(2144546-2144591)
chr7 (136-194)||(22801747-22801805)
chr7 (136-193)||(9037724-9037781)
chr7 (147-192)||(48964070-48964115)
chr7 (151-187)||(2143866-2143902)
chr7 (141-177)||(31377000-31377036)
[»] chr5 (7 HSPs)
chr5 (322-446)||(20178377-20178501)
chr5 (138-190)||(30080511-30080563)
chr5 (147-195)||(21319950-21319998)
chr5 (136-171)||(309153-309188)
chr5 (125-194)||(19167582-19167652)
chr5 (136-194)||(26205766-26205824)
chr5 (129-181)||(11596474-11596526)
[»] scaffold0314 (1 HSPs)
scaffold0314 (142-194)||(8949-9001)
[»] chr2 (8 HSPs)
chr2 (147-194)||(43586011-43586058)
chr2 (146-194)||(13501084-13501132)
chr2 (322-486)||(25633453-25633617)
chr2 (143-193)||(14450802-14450852)
chr2 (133-194)||(10535765-10535826)
chr2 (140-193)||(18512149-18512202)
chr2 (151-192)||(24067263-24067304)
chr2 (136-192)||(42665603-42665659)
[»] chr8 (8 HSPs)
chr8 (136-194)||(26915246-26915304)
chr8 (136-193)||(42874517-42874574)
chr8 (138-194)||(24295143-24295199)
chr8 (151-195)||(31119097-31119141)
chr8 (146-192)||(27733852-27733898)
chr8 (140-195)||(34073983-34074038)
chr8 (136-186)||(34739075-34739125)
chr8 (125-193)||(10497823-10497891)
[»] chr3 (2 HSPs)
chr3 (136-194)||(49179721-49179779)
chr3 (146-194)||(14338489-14338537)
[»] chr1 (6 HSPs)
chr1 (136-194)||(40686764-40686822)
chr1 (127-190)||(24462280-24462343)
chr1 (138-187)||(14332406-14332454)
chr1 (151-192)||(18946042-18946083)
chr1 (136-193)||(40176598-40176655)
chr1 (149-193)||(46748915-46748959)
[»] chr4 (6 HSPs)
chr4 (147-192)||(13307883-13307928)
chr4 (141-192)||(44362666-44362717)
chr4 (136-194)||(37496699-37496757)
chr4 (148-194)||(13117436-13117482)
chr4 (147-181)||(28663498-28663532)
chr4 (140-181)||(49887755-49887796)
[»] scaffold0024 (1 HSPs)
scaffold0024 (136-192)||(18116-18172)
[»] scaffold0504 (1 HSPs)
scaffold0504 (141-192)||(8705-8756)


Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Original strand, 5579527 - 5580033
Alignment:
Q  14 cacagattacctgaccaattcatcatcaacaatcataaactattagatgtttccatgagatcgactcgagtctatcatgcacgaacacatacacagatac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5579527 cacagattacctgaccaattcatcatcaacaatcataaactattagatgtttccatgagatcgactcgagtctatcatgcacgaacacagacacagatac 5579626  T
Q  114 tggatacgatgctgacacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcgacattctgtcggtgttagg 213  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5579627 tggatacgatgctgacacgaatacgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcgacattctgtcggtgttagg 5579726  T
Q  214 catgacacgtgtcaga-------acatgcattcaatcataagtgtccgtggaatagagattcgagtagaattattataaaaatagggcatgcaaaagaaa 306  Q
    ||| | ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5579727 cataatacgtgtcagacaccagaacatgcattcaatcataagtgtccgtggaatagagattcgagtagaattattataaaaatagggcatgcaaaagaaa 5579826  T
Q  307 gaaaagaaccttgcagcaccagccagcccacatgtcatcataacgtccaattggctggccatctcccatgagaccaaaatacatagctggtccaatcaga 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5579827 gaaaagaaccttgcagcaccagccagcccacatgtcatcataacgtccaattggctggccatctcccatgagaccaaaatacatagctggtccaatcaga 5579926  T
Q  407 tcacgatcaaatgccaaattcattccacacattggaaacaatgttccttttggtatggtaagaacagtatccacataccttattacatcaacacaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5579927 tcacgatcaaatgccaaattcattccacacattggaaacaatgttccttttggtatggtaagaacagtatccacataccttattacatcaacacaaatac 5580026  T
Q  507 tcaaaat 513  Q
    |||||||    
T  5580027 tcaaaat 5580033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 10031555 - 10031621
Alignment:
Q  126 tgacacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10031555 tgacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 6751937 - 6751888
Alignment:
Q  145 tcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6751937 tcgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 6751888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 19369823 - 19369870
Alignment:
Q  147 gataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  19369823 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 19369870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 2140553 - 2140500
Alignment:
Q  128 acacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgta 181  Q
    |||||||||| ||||||| ||||| | ||||||||||||||||| |||||||||    
T  2140553 acacaaatacatcgacattgataataatttgagaaaatgacataattcaatgta 2140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 22745962 - 22746010
Alignment:
Q  146 cgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  22745962 cgataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcg 22746010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 29959180 - 29959215
Alignment:
Q  146 cgataaaattttgagaaaatgacatagttcaatgta 181  Q
    |||||||||||||||||||||||||| |||||||||    
T  29959180 cgataaaattttgagaaaatgacataattcaatgta 29959215  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 17168880 - 17168934
Alignment:
Q  127 gacacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgta 181  Q
    |||||||| |||||||||| ||||| | ||||| ||||||||||| |||||||||    
T  17168880 gacacaaacacgtcgacattgataataatttgaaaaaatgacataattcaatgta 17168934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 323 - 488
Target Start/End: Original strand, 5018125 - 5018290
Alignment:
Q  323 caccagccagcccacatgtcatcataacgtccaattggctggccatctcccatgagaccaaaatacatagctggtccaatcagatcacgatcaaatgcca 422  Q
    |||||||||||||||||||| || || |||||||| ||||| ||||| |||||||||||||| |||||||||||||| || || ||||||||||||||||    
T  5018125 caccagccagcccacatgtcgtcgtagcgtccaataggctgaccatcacccatgagaccaaagtacatagctggtccgatgagctcacgatcaaatgcca 5018224  T
Q  423 aattcattccacacattggaaacaatgttccttttggtatggtaagaacagtatccacatacctta 488  Q
    | |||||||||||||| |||||||| ||||||||||| ||||| |||| || ||||||||||||||    
T  5018225 agttcattccacacatgggaaacaaagttccttttggaatggtcagaatagcatccacatacctta 5018290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 5937496 - 5937428
Alignment:
Q  125 ctgacacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    |||||||| | ||||| |||  ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  5937496 ctgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 5937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 9050197 - 9050140
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    |||||||||| ||||||||||||| |||||||||||||||||| || ||||| |||||    
T  9050197 acgtcgacatagataaaattttgaaaaaatgacatagttcaatataatcacatgtgtc 9050140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 1885579 - 1885626
Alignment:
Q  147 gataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  1885579 gataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcg 1885626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 2144591 - 2144546
Alignment:
Q  148 ataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 22801805 - 22801747
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||| ||| |||| ||||||||||| ||||||||| |||| |||| ||||||||||||    
T  22801805 acgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcg 22801747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 9037781 - 9037724
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    ||||| |||| ||||||||||||| ||||||| |||||||||| || ||||| |||||    
T  9037781 acgtcaacatagataaaattttgaaaaaatgatatagttcaatataatcacatgtgtc 9037724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 48964115 - 48964070
Alignment:
Q  147 gataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    ||||||||| ||||||||||||||| |||||| || ||||||||||    
T  48964115 gataaaattgtgagaaaatgacataattcaatttaatcacaagtgt 48964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 2143902 - 2143866
Alignment:
Q  151 aaattttgagaaaatgacatagttcaatgtagtcaca 187  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 31377000 - 31377036
Alignment:
Q  141 gacatcgataaaattttgagaaaatgacatagttcaa 177  Q
    |||||| |||||||||||||||||||||||| |||||    
T  31377000 gacatcaataaaattttgagaaaatgacataattcaa 31377036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 20178501 - 20178377
Alignment:
Q  322 gcaccagccagcccacatgtcatcataacgtccaattggctggccatctcccatgagaccaaaatacatagctggtccaatcagatcacgatcaaatgcc 421  Q
    |||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| || || ||||| || ||||| ||||| ||||| || || |||    
T  20178501 gcaccagccagcccacatatcatcgtaacgtccaataggctgaccatcacccatgagtccgaagtacattgcaggtccgatcagctcacggtcgaaggcc 20178402  T
Q  422 aaattcattccacacattggaaaca 446  Q
    | |||||| || ||||| |||||||    
T  20178401 agattcataccgcacatgggaaaca 20178377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 30080563 - 30080511
Alignment:
Q  138 gtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagt 190  Q
    |||||||  ||||||||||||||||||||||||| ||||||||| ||||||||    
T  30080563 gtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 21319998 - 21319950
Alignment:
Q  147 gataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcga 195  Q
    ||||||||||||| ||||||| ||| ||||||||| |||||||||||||    
T  21319998 gataaaattttgaaaaaatgatataattcaatgtaatcacaagtgtcga 21319950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 309153 - 309188
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacata 171  Q
    ||||||||| ||||||||||||||||||||||||||    
T  309153 acgtcgacaccgataaaattttgagaaaatgacata 309188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 19167652 - 19167582
Alignment:
Q  125 ctgacacaaatacgtcgacatcgataaaattttgagaaaa-tgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||| | |||| |||| |||||||||||||| |||| ||||| | ||||||||| ||||||||||||    
T  19167652 ctgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcg 19167582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 26205824 - 26205766
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||||| | |||||||||||||||||||||||||| |||| |||| ||| | ||||||    
T  26205824 acgtcgataccgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcg 26205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 11596526 - 11596474
Alignment:
Q  129 cacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgta 181  Q
    |||||| ||||||| | |||||| | ||||||||||||||||| |||||||||    
T  11596526 cacaaacacgtcgataccgataataatttgagaaaatgacataattcaatgta 11596474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 8949 - 9001
Alignment:
Q  142 acatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  8949 acatcgataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcg 9001  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 43586058 - 43586011
Alignment:
Q  147 gataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  43586058 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 43586011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 13501132 - 13501084
Alignment:
Q  146 cgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  13501132 cgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 486
Target Start/End: Original strand, 25633453 - 25633617
Alignment:
Q  322 gcaccagccagcccacatgtcatcataacgtccaattggctggccatctcccatgagaccaaaatacatagctggtccaatcagatcacgatcaaatgcc 421  Q
    |||||| ||||||||||| ||||| || || ||||| || ||||| || |||||||| ||||| ||||  || || || ||||  || || |  ||||||    
T  25633453 gcaccacccagcccacatatcatcgtagcgaccaataggttggccttcacccatgagtccaaagtacaatgcaggaccgatcaattcccggttgaatgcc 25633552  T
Q  422 aaattcattccacacattggaaacaatgttccttttggtatggtaagaacagtatccacatacct 486  Q
    |||||||| |||||||| ||||| |  ||||| |||||||| || | ||||| ||||||||||||    
T  25633553 aaattcataccacacatgggaaagagggttccctttggtattgtcataacagcatccacatacct 25633617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 14450852 - 14450802
Alignment:
Q  143 catcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    |||||| |||||||||||||||| ||||| ||||||||| |||||||||||    
T  14450852 catcgacaaaattttgagaaaatcacataattcaatgtaatcacaagtgtc 14450802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 10535826 - 10535765
Alignment:
Q  133 aatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||| ||||| |||||| | ||||||||||||||||| |||| |||| ||| ||||||||    
T  10535826 aatacgccgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcg 10535765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 18512202 - 18512149
Alignment:
Q  140 cgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    ||||| |||||||||||||||||||| | ||| ||||||||| ||||| |||||    
T  18512202 cgacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 24067263 - 24067304
Alignment:
Q  151 aaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    |||||||| |||||||||||| ||||||||| ||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgt 24067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 42665603 - 42665659
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    ||||||| |||||||||||||||| || |||||||  ||||||||| ||||| ||||    
T  42665603 acgtcgatatcgataaaattttgaaaagatgacatgattcaatgtaatcacatgtgt 42665659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 26915304 - 26915246
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||||  ||||||||||||||||||||||||| || |||||| ||||||||||||    
T  26915304 acgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 42874517 - 42874574
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    ||||||||| || ||| ||||||||||||||||||| ||||||||| |||||||||||    
T  42874517 acgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 24295199 - 24295143
Alignment:
Q  138 gtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||||||||||||| ||||||||||||| | || |||||| ||||||||||||    
T  24295199 gtcgacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcg 24295143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 31119097 - 31119141
Alignment:
Q  151 aaattttgagaaaatgacatagttcaatgtagtcacaagtgtcga 195  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcga 31119141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 27733852 - 27733898
Alignment:
Q  146 cgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  27733852 cgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 34074038 - 34073983
Alignment:
Q  140 cgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcga 195  Q
    ||||| |||||||||||||| ||||||||||| || |||||| ||| |||||||||    
T  34074038 cgacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcga 34073983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 34739125 - 34739075
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcac 186  Q
    |||| ||||||||||| | | ||||||||||||||| ||||||||||||||    
T  34739125 acgttgacatcgataataatatgagaaaatgacataattcaatgtagtcac 34739075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 10497891 - 10497823
Alignment:
Q  125 ctgacacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    |||||||| | ||| |||||  ||||||||||||||||||| ||||| ||  ||||| |||||||||||    
T  10497891 ctgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtc 10497823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 49179779 - 49179721
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||||||| |||||||||||||||||| ||||||| ||| ||||| ||||||||||||    
T  49179779 acgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcg 49179721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 14338537 - 14338489
Alignment:
Q  146 cgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||||||||| ||||||||||| ||||||||| |||||| |||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcg 14338489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 40686822 - 40686764
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||||| ||| ||||||||    
T  40686822 acgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgtcg 40686764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 24462343 - 24462280
Alignment:
Q  127 gacacaaatacgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagt 190  Q
    |||||| |||||||||||  ||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  24462343 gacacagatacgtcgacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 14332406 - 14332454
Alignment:
Q  138 gtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcaca 187  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||| |||||    
T  14332406 gtcgacaccgataaaattt-gagaaaatgacataattcaatgtaatcaca 14332454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  151 aaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    ||||||||||||||||||||| ||||||||| |||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 40176598 - 40176655
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    ||||| ||| ||||||||||||||||||||||| |  ||||||||| ||||| |||||    
T  40176598 acgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtc 40176655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 46748959 - 46748915
Alignment:
Q  149 taaaattttgagaaaatgacatagttcaatgtagtcacaagtgtc 193  Q
    ||||||||||| |||| |||||||||||||||| |||||| ||||    
T  46748959 taaaattttgaaaaaacgacatagttcaatgtaatcacaaatgtc 46748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 13307883 - 13307928
Alignment:
Q  147 gataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 13307928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 44362666 - 44362717
Alignment:
Q  141 gacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    |||| |||||||||||||||||||||||||| || |||||| ||||||||||    
T  44362666 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44362717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 37496699 - 37496757
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    |||| |||| ||||||  |||||||||||||||||| ||||||||| ||||||||||||    
T  37496699 acgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcg 37496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 13117436 - 13117482
Alignment:
Q  148 ataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 194  Q
    ||||||||| |||||||||||| | ||||||||| ||||||||||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcg 13117482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 28663498 - 28663532
Alignment:
Q  147 gataaaattttgagaaaatgacatagttcaatgta 181  Q
    ||||||||||||||||||||||||| |||||||||    
T  28663498 gataaaattttgagaaaatgacataattcaatgta 28663532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 49887755 - 49887796
Alignment:
Q  140 cgacatcgataaaattttgagaaaatgacatagttcaatgta 181  Q
    ||||||||||||||||||||  |||||||||| |||||||||    
T  49887755 cgacatcgataaaattttgaagaaatgacataattcaatgta 49887796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 18172 - 18116
Alignment:
Q  136 acgtcgacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||| || |||||||    
T  18172 acgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgt 18116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 8756 - 8705
Alignment:
Q  141 gacatcgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 192  Q
    ||||| ||||||||||||||||||||||||  |||||||||  |||||||||    
T  8756 gacatggataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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