View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10057_low_6 (Length: 476)
Name: NF10057_low_6
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 2327469 - 2327908
Alignment:
| Q |
18 |
cttaactaactatataagtgaaaagaataatgtttacgagacttatctcaaaatacaacatattcttctagatctgacagcattttggatgcagtgtttc |
117 |
Q |
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| T |
2327469 |
cttaactaactatataagtgaaaagaataatgtt-atgagacttatctcaaaatacaacatattcttctagatctgacagcattttggatgcagtgtttc |
2327567 |
T |
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| Q |
118 |
ttacaggcttcttcacagatacaccgatatagcaccattctcagggttaacccccacataaaccagataacacactttggtattgaattaaccttttcag |
217 |
Q |
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| T |
2327568 |
ttacaggcttcatcacagatacaccgatatagcaccattctcagggttaacccccacatataccagataacacactttggtattgaattaaccttttcag |
2327667 |
T |
|
| Q |
218 |
tgtgccccccttgaaaaatcaacaattttcgatagctaccaaccttcgtttcccgaaaaaggaaactggtgtcaactattgcttaatagtgtgtgtacag |
317 |
Q |
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| T |
2327668 |
tgtgccccccttgaaaaataaacaattttcgatagctaccaaccttcgtttcccgaaaaaggaaactggtgtcaactattgcttaatagtgtgtgtacag |
2327767 |
T |
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| Q |
318 |
ttataataggtttggcttnnnnnnntcgtttactgcataaaaaacattgggtaaagaagtaggatgattctctct-nnnnnnnggtaaatttgtgtggtg |
416 |
Q |
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|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
2327768 |
ttataataggtttggcttaaaaaaatcgatcactgcataaaaaacattgggtaaagaagtaggatgattctctctaaaaaaaatgtaaatttgtgtgatg |
2327867 |
T |
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| Q |
417 |
atttttagggtacacaaatggttacaagttcattatctacc |
457 |
Q |
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| T |
2327868 |
gtttttagggtacacaaatggttataagttcattatctacc |
2327908 |
T |
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