View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10057_low_7 (Length: 359)
Name: NF10057_low_7
Description: NF10057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10057_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 51822643 - 51822952
Alignment:
| Q |
26 |
tatcaaaaaatattttttatgttccagcatgcaaaatattatctatctatctatcatttttcaatacaatttttatcatgtact--------------ta |
111 |
Q |
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| T |
51822643 |
tatcaaaaaatattttttatgttccggcatgcaaaatattatctatctatctatcattttccaatataatttttgtcatgtactgtatgtcatgtactta |
51822742 |
T |
|
| Q |
112 |
ttgttttacgaatcaaaggcaccatttatataatatatctnnnnnnnnctcttatgagttcaacatttttctaccaatcaataaatgttgattcagttga |
211 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51822743 |
ttgttttacgaatcaaagacaccatttatataatatatctaaaaaaaactcttatgagttcaacatttttctaccgatcaataaatgttgattcagttga |
51822842 |
T |
|
| Q |
212 |
taaggagttagactcataacccactagaatatgagttcaactctcatcgtcagggtgagaacaaagtgaacgctcttagaactatgagaaatatatgaac |
311 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
51822843 |
taaggagttagactcataacccattagaatatgagttcaactctcatcgtcagggtgaggacaaagtgaacgctcttagaactataagaaatatatgaac |
51822942 |
T |
|
| Q |
312 |
cccaagacct |
321 |
Q |
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|||||||||| |
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| T |
51822943 |
cccaagacct |
51822952 |
T |
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