View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10058_high_9 (Length: 204)

Name: NF10058_high_9
Description: NF10058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10058_high_9
NF10058_high_9
[»] chr7 (13 HSPs)
chr7 (4-132)||(14107929-14108058)
chr7 (4-132)||(14417886-14418015)
chr7 (18-114)||(4168753-4168850)
chr7 (57-125)||(18670448-18670516)
chr7 (66-125)||(44114609-44114668)
chr7 (47-132)||(40926453-40926538)
chr7 (66-114)||(4858297-4858345)
chr7 (20-95)||(38407355-38407431)
chr7 (51-125)||(28326328-28326402)
chr7 (56-129)||(35483674-35483747)
chr7 (143-188)||(45087079-45087124)
chr7 (56-116)||(32653579-32653639)
chr7 (56-116)||(35296758-35296818)
[»] scaffold0025 (1 HSPs)
scaffold0025 (4-125)||(54695-54817)
[»] chr4 (19 HSPs)
chr4 (4-115)||(39591055-39591167)
chr4 (4-115)||(96574-96683)
chr4 (27-116)||(11113855-11113945)
chr4 (4-115)||(52981039-52981152)
chr4 (55-114)||(26121985-26122044)
chr4 (57-114)||(44664271-44664328)
chr4 (56-125)||(46795969-46796038)
chr4 (50-125)||(15787440-15787514)
chr4 (56-114)||(41348354-41348412)
chr4 (143-188)||(11038591-11038636)
chr4 (56-129)||(38417653-38417726)
chr4 (56-125)||(47667282-47667351)
chr4 (143-188)||(50551413-50551458)
chr4 (143-188)||(51645970-51646015)
chr4 (56-125)||(56001212-56001280)
chr4 (51-87)||(669579-669615)
chr4 (56-124)||(3528295-3528363)
chr4 (47-115)||(35789524-35789592)
chr4 (56-116)||(52137542-52137602)
[»] chr2 (6 HSPs)
chr2 (5-114)||(4701378-4701488)
chr2 (20-114)||(7982427-7982522)
chr2 (145-188)||(36889748-36889791)
chr2 (75-125)||(21012042-21012092)
chr2 (143-188)||(36888352-36888397)
chr2 (63-115)||(41295219-41295271)
[»] scaffold0045 (1 HSPs)
scaffold0045 (50-115)||(75859-75924)
[»] chr1 (10 HSPs)
chr1 (5-129)||(9416988-9417113)
chr1 (57-114)||(28999954-29000011)
chr1 (4-100)||(44978556-44978653)
chr1 (4-125)||(33941421-33941543)
chr1 (18-130)||(52741587-52741701)
chr1 (56-125)||(40110595-40110664)
chr1 (63-115)||(33793893-33793945)
chr1 (56-115)||(24516448-24516507)
chr1 (46-96)||(22169152-22169202)
chr1 (63-115)||(27690579-27690631)
[»] chr8 (13 HSPs)
chr8 (18-110)||(41521436-41521529)
chr8 (4-121)||(10053634-10053752)
chr8 (47-115)||(2419989-2420057)
chr8 (47-115)||(31872738-31872806)
chr8 (53-115)||(39545044-39545106)
chr8 (56-125)||(45395958-45396027)
chr8 (50-115)||(118961-119026)
chr8 (56-125)||(44607259-44607328)
chr8 (63-125)||(16362523-16362585)
chr8 (56-125)||(22621077-22621146)
chr8 (66-115)||(45195757-45195806)
chr8 (63-115)||(7487338-7487390)
chr8 (57-125)||(37274991-37275059)
[»] scaffold0024 (1 HSPs)
scaffold0024 (50-125)||(72923-72998)
[»] chr3 (11 HSPs)
chr3 (50-109)||(786376-786435)
chr3 (143-184)||(49221525-49221566)
chr3 (67-115)||(19622873-19622921)
chr3 (59-125)||(17345414-17345480)
chr3 (143-188)||(20184462-20184507)
chr3 (50-115)||(38639132-38639197)
chr3 (4-93)||(27234601-27234691)
chr3 (143-188)||(27688500-27688545)
chr3 (143-188)||(27695574-27695619)
chr3 (56-124)||(47766894-47766962)
chr3 (56-116)||(49380894-49380954)
[»] chr5 (4 HSPs)
chr5 (4-114)||(7427849-7427962)
chr5 (5-123)||(41905281-41905399)
chr5 (51-125)||(8188138-8188212)
chr5 (60-116)||(9219292-9219348)
[»] chr6 (3 HSPs)
chr6 (20-132)||(33807786-33807899)
chr6 (143-188)||(29744795-29744840)
chr6 (143-188)||(29751139-29751184)
[»] scaffold0029 (2 HSPs)
scaffold0029 (143-188)||(70683-70728)
scaffold0029 (143-188)||(71828-71873)
[»] scaffold0084 (1 HSPs)
scaffold0084 (60-125)||(11810-11875)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 14108058 - 14107929
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattataca 102  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||  |||||||||||||| |||    
T  14108058 ggagaagaagagaaggaaaaaacttagatatgggtggttcactgtagtatattatggacctgcaatcaaacggttataattatattaaaaatattagaca 14107959  T
Q  103 tcaaaaaactaacgtagaggaccgaaacgg 132  Q
    |||||||||||||| |||||||| ||||||    
T  14107958 tcaaaaaactaacggagaggaccaaaacgg 14107929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 14418015 - 14417886
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattataca 102  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||  |||||||||||||| |||    
T  14418015 ggagaagaagagaaggaaaaaacttagatatgggtggttcactgtagtatattatggacctgcaatcaaacggttataattatattaaaaatattagaca 14417916  T
Q  103 tcaaaaaactaacgtagaggaccgaaacgg 132  Q
    |||||||||||||| |||||||| ||||||    
T  14417915 tcaaaaaactaacggagaggaccaaaacgg 14417886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 4168753 - 4168850
Alignment:
Q  18 ggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaa 114  Q
    |||||||| ||||||||| ||||| |||| || |||| ||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  4168753 ggaaaaaaattagatatgtgtggttcactgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattatccatcaaaaaactaa 4168850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 18670448 - 18670516
Alignment:
Q  57 tggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||  ||||||||    
T  18670448 tggacctgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaacagagaggacc 18670516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 44114609 - 44114668
Alignment:
Q  66 aatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    |||||||||||||||||| |||||||||||| |||||| |||||||||||| ||||||||    
T  44114609 aatcaaacggttataatcatattaaaaatatgatacattaaaaaactaacggagaggacc 44114668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 40926453 - 40926538
Alignment:
Q  47 tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggaccgaaacgg 132  Q
    ||||||| ||||||| |  |||||||||||||||||| |||||||||||||| |||| |||||  ||||| |||||||| ||||||    
T  40926453 tagtatactatggaccttaaatcaaacggttataatcatattaaaaatattagacattaaaaagttaacggagaggaccaaaacgg 40926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 4858297 - 4858345
Alignment:
Q  66 aatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaa 114  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  4858297 aatcaaacggttataatcatattaaaaatattagacatcaaaaaactaa 4858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 38407355 - 38407431
Alignment:
Q  20 aaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaata 95  Q
    |||||| |||||||| |||||| |||| || |||| ||||||| ||||||||||||||||||||| |||||||||||    
T  38407355 aaaaaaattagatatcggtggttcactgtaatatactatggacctgcaatcaaacggttataatcatattaaaaata 38407431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 28326328 - 28326402
Alignment:
Q  51 atattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    |||| ||||||||||||||||| ||||| |||| |||||||||  ||| |||| |||||||||||| ||||||||    
T  28326328 atataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaactaacggagaggacc 28326402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 35483747 - 35483674
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggaccgaaa 129  Q
    |||||| |||||||||||||||  ||||  || |||||||||| ||||  ||| ||||||| ||||||||||||    
T  35483747 atggacttgcaatcaaacggttgaaatcaaatcaaaaatattagacatttaaatactaacggagaggaccgaaa 35483674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 45087124 - 45087079
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || ||||||||||||||||||| ||||||||    
T  45087124 agttatgggaccaaaccgataccaaaaaattagttaaaggactaaa 45087079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 32653639 - 32653579
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacg 116  Q
    ||||||||||||||||||||||| |||  ||| |||||| |||  ||| ||||||||||||    
T  32653639 atggacatgcaatcaaacggttaaaatgatatcaaaaattttagtcattaaaaaactaacg 32653579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 35296758 - 35296818
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacg 116  Q
    ||||||||||||||||||||||| |||| ||| |||||  ||| |||| |||||| |||||    
T  35296758 atggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattaaaaaattaacg 35296818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 54817 - 54695
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattataca 102  Q
    ||||||| ||||| |||||||| | |||||||| |||| |||| || |||| |||| |  ||||||||||||||||||||| |||||||||||||| |||    
T  54817 ggagaagaagagagggaaaaaaatcagatatggatggttcactgtaatatactatgaatctgcaatcaaacggttataatcatattaaaaatattagaca 54718  T
Q  103 tcaaaaaactaacgtagaggacc 125  Q
    |||||||||||||| ||||||||    
T  54717 tcaaaaaactaacggagaggacc 54695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 39591167 - 39591055
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattataca 102  Q
    ||||||| |||||||||||||| | | |||||| |||| |||| || |||| ||||||| ||||||||||||||||||||| |||||||||||||| |||    
T  39591167 ggagaagaagagaaggaaaaaaatcaaatatggatggttcactgtaatatactatggacctgcaatcaaacggttataatcatattaaaaatattagaca 39591068  T
Q  103 tcaaaaaactaac 115  Q
    | |||||||||||    
T  39591067 taaaaaaactaac 39591055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 96574 - 96683
Alignment:
Q  4 ggagaagcagagaaggaaaaaactt-agatatgggtggtacacttagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattataca 102  Q
    ||||||| ||||| ||||||||  | ||||||||||||| ||||  ||| ||||||||| ||||||||||||||||| ||| |||||||||||||| |||    
T  96574 ggagaagaagagatggaaaaaaaatcagatatgggtggttcact--gta-attatggacctgcaatcaaacggttattatcatattaaaaatattagaca 96670  T
Q  103 tcaaaaaactaac 115  Q
    |||||||||||||    
T  96671 tcaaaaaactaac 96683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 11113945 - 11113855
Alignment:
Q  27 ttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacg 116  Q
    ||||||||||||||| |||  || |||| ||||||| ||||||| ||||||||||||  |||||||||||||| ||||| |||||||||||    
T  11113945 ttagatatgggtggttcaccataatatactatggacctgcaatcgaacggttataattatattaaaaatattagacatctaaaaactaacg 11113855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 52981039 - 52981152
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacg-gttataatcgtattaaaaatattatac 101  Q
    ||||||| ||||||||||| || | | ||||||||||| |||| || |||| ||||||| ||||||||||   ||||||||| |||||||||||||| ||    
T  52981039 ggagaagaagagaaggaaacaaatcaaatatgggtggttcactgtaatatactatggacttgcaatcaaaaaagttataatcatattaaaaatattagac 52981138  T
Q  102 atcaaaaaactaac 115  Q
    || |||||||||||    
T  52981139 ataaaaaaactaac 52981152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 26122044 - 26121985
Alignment:
Q  55 tatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaa 114  Q
    ||||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||||||    
T  26122044 tatggacctgcaatcgaacggttgtaatcatattaaaaatattagacatcaaaaaactaa 26121985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 44664271 - 44664328
Alignment:
Q  57 tggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaa 114  Q
    ||||| ||||||||||||  ||||||| ||||||||||||||||||| ||||||||||    
T  44664271 tggacctgcaatcaaacgactataatcatattaaaaatattatacattaaaaaactaa 44664328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 46795969 - 46796038
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||||||||| ||||| |||| ||| |||||  ||| |||| |||||||||||| ||||||||    
T  46795969 atggacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 46796038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 15787440 - 15787514
Alignment:
Q  50 tatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    |||| ||||||| ||||||| |||||| |||||| |||||||||||||| |||| |||||| ||| | ||||||||    
T  15787440 tatactatggacctgcaatccaacggt-ataatcatattaaaaatattagacattaaaaaattaatggagaggacc 15787514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 41348412 - 41348354
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaa 114  Q
    ||||||||||||||||| | ||| |||| ||| |||||| |||||||| ||||||||||    
T  41348412 atggacatgcaatcaaatgattaaaatcatatcaaaaattttatacattaaaaaactaa 41348354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 11038636 - 11038591
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  11038636 agttatgggaccaaagcaataccaaaaaattagctaagggactaaa 11038591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 38417726 - 38417653
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggaccgaaa 129  Q
    |||||| |||||||||||||||  |||| |||||||||   || |||| |||| ||||||| ||||||||||||    
T  38417726 atggacctgcaatcaaacggttgaaatcatattaaaaaatctaaacattaaaatactaacggagaggaccgaaa 38417653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 47667351 - 47667282
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||||||||| ||||| ||||  || |||||  ||| |||| |||||||||||| ||||||||    
T  47667351 atggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacgcagaggacc 47667282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 50551413 - 50551458
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    |||||||| ||||| || |||||||||||||| |||||||||||||    
T  50551413 agttatggaactaaaccgataccaaaaaattaattaagggactaaa 50551458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 51645970 - 51646015
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || ||||||||||||||| ||||||||||||    
T  51645970 agttatgggaccaaaccgataccaaaaaattagctaagggactaaa 51646015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 56001212 - 56001280
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||||||||| ||||| ||||  || ||||| |||| |||| |||||||||||| ||||||||    
T  56001212 atggacatgcaatcaaatggttaaaatcacataaaaaa-attagacattaaaaaactaacgaagaggacc 56001280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 669579 - 669615
Alignment:
Q  51 atattatggacatgcaatcaaacggttataatcgtat 87  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  669579 atataatggacatgcaatcaaacggttaaaatcgtat 669615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 3528363 - 3528295
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggac 124  Q
    ||||||||||||||||| ||||| ||||  || ||||| |||| |||| |||||||||| | |||||||    
T  3528363 atggacatgcaatcaaatggttaaaatcacataaaaaaaattagacattaaaaaactaatggagaggac 3528295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 35789524 - 35789592
Alignment:
Q  47 tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||| |||| || ||||||| |||||| |||||  |||||||||||||| |||| |||||| ||||    
T  35789524 tagtataatatgaacctgcaatctaacggtcataattatattaaaaatattagacataaaaaaattaac 35789592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 52137602 - 52137542
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacg 116  Q
    ||||||||||||||||||||||| |||| ||| |||||  ||| ||||  |||||||||||    
T  52137602 atggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgaaaaactaacg 52137542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 4701378 - 4701488
Alignment:
Q  5 gagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacat 103  Q
    |||||| ||||||||||| || | | ||||||||||| |||  || |||| ||||||| ||||||||||||||||||||| | |||||||||||| ||||    
T  4701378 gagaagaagagaaggaaacaaatcaaatatgggtggttcaccataatatactatggacctgcaatcaaacggttataatcatgttaaaaatattagacat 4701477  T
Q  104 caaaaaactaa 114  Q
    |||||||||||    
T  4701478 caaaaaactaa 4701488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 7982522 - 7982427
Alignment:
Q  20 aaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaa 114  Q
    |||||| ||||||||| ||||| |||| || |||| ||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  7982522 aaaaaaattagatatgtgtggttcactgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattatccatcaaaaaactaa 7982427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 36889748 - 36889791
Alignment:
Q  145 ttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||| || || ||||||||||||||||||||||||||||    
T  36889748 ttatgggaccaaaccgataccaaaaaattagttaagggactaaa 36889791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 21012042 - 21012092
Alignment:
Q  75 gttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||| ||||    
T  21012042 gttataatcatattaaaaatattatacattcaaaaactaacggagatgacc 21012092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 36888397 - 36888352
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || ||||||||||||||| ||||||||||||    
T  36888397 agttatgggaccaaaccgataccaaaaaattagctaagggactaaa 36888352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 41295271 - 41295219
Alignment:
Q  63 tgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||| ||||||||||||| ||||| ||||||||   ||||||||||||||    
T  41295271 tgcaatcgaacggttataatcatattacaaatattaagaatcaaaaaactaac 41295219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 75924 - 75859
Alignment:
Q  50 tatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  75924 tatattatggacctgcaatcaaacggttattatcatattaaaaatattagacatcaaaaaactaac 75859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 9416988 - 9417113
Alignment:
Q  5 gagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacat 103  Q
    |||||| ||| ||| |||| | ||||||||||||||| |||| ||  ||  ||||||| |  |||||||||||||||||| |||||||||||||||||||    
T  9416988 gagaagaagaaaagaaaaataattagatatgggtggttcactataacatgatatggaccttaaatcaaacggttataatcatattaaaaatattatacat 9417087  T
Q  104 caaaaaactaacgtagaggaccgaaa 129  Q
     |||||||||||| ||||||| ||||    
T  9417088 taaaaaactaacggagaggactgaaa 9417113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 29000011 - 28999954
Alignment:
Q  57 tggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaa 114  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  29000011 tggacctgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaa 28999954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 44978556 - 44978653
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattata 100  Q
    ||||||| ||| |||||||| | ||||||||| ||||| |||| || |||| || | || ||||||||||||||||||||| ||||||||||||||||    
T  44978556 ggagaagaagaaaaggaaaataattagatatgagtggttcactgtaatatactacgaacctgcaatcaaacggttataatcatattaaaaatattata 44978653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 33941543 - 33941421
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacac--ttagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatac 101  Q
    ||||||| ||| |||||||||| |||||||| |||||| |||  ||| ||||   || || |||||||||||||||| |||| |||||||||| ||| ||    
T  33941543 ggagaagaagaaaaggaaaaaaattagatataggtggttcacagtta-tatacagtgcacctgcaatcaaacggttaaaatcatattaaaaatgttagac 33941445  T
Q  102 atcaaaaaactaacgtagaggacc 125  Q
    || |||||||||||  ||||||||    
T  33941444 attaaaaaactaacagagaggacc 33941421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 52741701 - 52741587
Alignment:
Q  18 ggaaaaaacttagatatgggtggtacact-tagtatattatggacatg-caatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    |||||||| | ||||||||||||| |||| || |||| ||||||| |  ||||||||||||||||||| ||||||||||| || |  | ||||||||||     
T  52741701 ggaaaaaaatcagatatgggtggttcactataatatactatggacctaacaatcaaacggttataatcatattaaaaatactagaagttaaaaaactaat 52741602  T
Q  116 gtagaggaccgaaac 130  Q
    | |||||||| ||||    
T  52741601 ggagaggaccaaaac 52741587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 40110595 - 40110664
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||||||||| ||||| |||| ||| || ||| |||||||| |||||||||||  ||||||||    
T  40110595 atggacatgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaacagagaggacc 40110664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 33793945 - 33793893
Alignment:
Q  63 tgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||||||| ||||||||| ||||||  |||||| ||||||||||||||||    
T  33793945 tgcaatcaaacagttataatcatattaattatattagacatcaaaaaactaac 33793893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 24516507 - 24516448
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||||||||||||| ||||| |||| ||| || ||| |||||||| |||||||||||    
T  24516507 atggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaaaactaac 24516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 22169152 - 22169202
Alignment:
Q  46 ttagtatattatggacatgcaatcaaacggttataatcgtattaaaaatat 96  Q
    |||||| | ||||||| | ||||||||||||||||||| ||||||||||||    
T  22169152 ttagtacactatggacttacaatcaaacggttataatcatattaaaaatat 22169202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 27690579 - 27690631
Alignment:
Q  63 tgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||| ||||||||||||| ||||| ||||||||   ||||||||||||||    
T  27690579 tgcaatcgaacggttataatcatattacaaatattaagaatcaaaaaactaac 27690631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 41521529 - 41521436
Alignment:
Q  18 ggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaa 110  Q
    |||||||| ||||||||| ||||| |||| || |||| ||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  41521529 ggaaaaaaattagatatgtgtggttcactgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattatccatcaaaaaa 41521436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 10053634 - 10053752
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattataca 102  Q
    ||||||| ||| |||||||| | ||||||||| ||||| |||| || |||| || | || ||||||||||||||||||||| ||||||||||||||||      
T  10053634 ggagaagaagaaaaggaaaataattagatatgagtggttcactgtaatatactacgaacctgcaatcaaacggttataatcatattaaaaatattataat 10053733  T
Q  103 tcaaaaaactaacgtagag 121  Q
    | |||||| ||||| ||||    
T  10053734 taaaaaaattaacggagag 10053752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 2420057 - 2419989
Alignment:
Q  47 tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||| ||||||| |||||||||||| |||||||| |||||||||||| | |||| |||||||||||    
T  2420057 tagtatactatggacctgcaatcaaacgattataatcatattaaaaatatcaaacataaaaaaactaac 2419989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 31872738 - 31872806
Alignment:
Q  47 tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||| ||||||  ||||||||||||||||||||| |||||||||||| | |||| |||||||||||    
T  31872738 tagtatactatggatctgcaatcaaacggttataatcatattaaaaatatcaaacataaaaaaactaac 31872806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 39545106 - 39545044
Alignment:
Q  53 attatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||||| |||||||||||||| |||||| | |||||||||||| ||||||||||| ||||    
T  39545106 attatggacctgcaatcaaacggtcataatcattttaaaaatattaaacatcaaaaaattaac 39545044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 45395958 - 45396027
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||| || |||||    
T  45395958 atggacatgcaatcaaacggttaaaatcgtataaaaaatatcagacattaagaaactaacggagtggacc 45396027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 118961 - 119026
Alignment:
Q  50 tatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    |||| ||||||| |||||||||| | |||||||| ||||||||  |||| ||||||||||||||||    
T  118961 tatactatggacctgcaatcaaatgattataatcatattaaaatcattagacatcaaaaaactaac 119026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 44607259 - 44607328
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    |||||| ||||||  |||||| |||||| |||||||||||||| |||| |||||||||||  ||||||||    
T  44607259 atggacctgcaattcaacggtcataatcatattaaaaatattagacattaaaaaactaactgagaggacc 44607328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 16362585 - 16362523
Alignment:
Q  63 tgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||| |||||||  |||| ||| |||||||||| |||| |||||||||||| ||||||||    
T  16362585 tgcaatcgaacggttgaaatcatatcaaaaatattagacattaaaaaactaacggagaggacc 16362523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 22621077 - 22621146
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||||||||| | ||| |||| ||| || ||| |||||||| |||||||||||  ||||||||    
T  22621077 atggacatgcaatcaaatgattaaaatcatatcaagaattttatacattaaaaaactaacagagaggacc 22621146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 45195757 - 45195806
Alignment:
Q  66 aatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    |||||| ||||||||||  |||||||||||||| ||||||||||| ||||    
T  45195757 aatcaagcggttataattatattaaaaatattaaacatcaaaaaattaac 45195806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 7487338 - 7487390
Alignment:
Q  63 tgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    |||||||||||| |||||||  |||||||| | ||| ||||||||||||||||    
T  7487338 tgcaatcaaacgattataataatattaaaattgttagacatcaaaaaactaac 7487390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 37275059 - 37274991
Alignment:
Q  57 tggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||||| || ||||  |||| ||| | |||| |||||||| |||||||||||| ||||||||    
T  37275059 tggacatgcaatcgaatggttgaaatcatatcagaaatgttatacattaaaaaactaacggagaggacc 37274991  T

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Target: scaffold0024 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 72923 - 72998
Alignment:
Q  50 tatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    |||| ||| ||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||||| ||||||||    
T  72923 tatactatagacctgcaatcaaacggttataatcatattaaaaatattataattaaaaaaactaacggagaggacc 72998  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 786376 - 786435
Alignment:
Q  50 tatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaa 109  Q
    |||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  786376 tatactatggacctgcaatcgaacggttataatcatattaaaaatattatacatcaaaaa 786435  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 49221566 - 49221525
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggac 184  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  49221566 agttatgggactaacccgataccaaaaaattagttaagggac 49221525  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 19622873 - 19622921
Alignment:
Q  67 atcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  19622873 atcaaacggttataatcatattaaaaatattagacatcaaaaaattaac 19622921  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 17345480 - 17345414
Alignment:
Q  59 gacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    ||||||||||| || ||||  |||| |||||||||||||| |||| |||||||||||| ||||||||    
T  17345480 gacatgcaatcgaatggttcaaatcatattaaaaatattagacattaaaaaactaacggagaggacc 17345414  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 20184507 - 20184462
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || ||||||||||||||||||||||||||||    
T  20184507 agttatgggaccaaaccgataccaaaaaattagttaagggactaaa 20184462  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 38639197 - 38639132
Alignment:
Q  50 tatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaac 115  Q
    |||| |||||||||  |||||||| ||||||||| | |||||||||||| | ||||||||||||||    
T  38639197 tatactatggacattaaatcaaacagttataatcattttaaaaatattagatatcaaaaaactaac 38639132  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 27234601 - 27234691
Alignment:
Q  4 ggagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaa 93  Q
    ||||||| ||| |||||||||  |||||||||||||||  ||  || |||| ||||||| ||||||| ||||||||||||| ||| |||||    
T  27234601 ggagaagaagaaaaggaaaaacattagatatgggtggtttaccataatatactatggacctgcaatctaacggttataatcatatcaaaaa 27234691  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 27688545 - 27688500
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || |||||||| |||||||||||||||||||    
T  27688545 agttatgggaccaaaccgataccaaataattagttaagggactaaa 27688500  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 27695574 - 27695619
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || |||||||| |||||||||||||||||||    
T  27695574 agttatgggaccaaaccgataccaaataattagttaagggactaaa 27695619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 47766894 - 47766962
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggac 124  Q
    ||||||||||||||||| ||||| ||||  || |||||  ||| |||| |||||||||||| |||||||    
T  47766894 atggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacgcagaggac 47766962  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 49380894 - 49380954
Alignment:
Q  56 atggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacg 116  Q
    |||||||||||||||||||| ||  ||| ||| |||||| ||| |||| ||||||||||||    
T  49380894 atggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 49380954  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 7427849 - 7427962
Alignment:
Q  4 ggagaagcagagaaggaaaaaact--tagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattata 100  Q
    ||||||| ||||||||||||||    |||||||| ||||  |||| || |||| ||||||| | ||||| ||||||||||||| |||||||||||||||     
T  7427849 ggagaagaagagaaggaaaaaaaaaatagatatgtgtggatcactgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattatc 7427948  T
Q  101 catcaaaaaactaa 114  Q
    ||||||||||||||    
T  7427949 catcaaaaaactaa 7427962  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 41905399 - 41905281
Alignment:
Q  5 gagaagcagagaaggaaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacat 103  Q
    |||||| ||| |||||||| | |||||||||||| || |||| ||  ||  ||||||| || ||||||| |||||||||| |||||||||||| ||||||    
T  41905399 gagaagaagaaaaggaaaataattagatatgggtagttcactgtaacatgctatggacctg-aatcaaatggttataatcatattaaaaatatgatacat 41905301  T
Q  104 caaaaaactaacgtagagga 123  Q
     |||||||||||| ||||||    
T  41905300 taaaaaactaacggagagga 41905281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 8188138 - 8188212
Alignment:
Q  51 atattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    |||| ||||||||||||||||| ||||| |||| ||| | |||| ||| |||| |||||||||||| ||||||||    
T  8188138 atataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggagaggacc 8188212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 9219348 - 9219292
Alignment:
Q  60 acatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacg 116  Q
    ||||||||||||||||||| ||||  || |||||| ||| |||| ||||||||||||    
T  9219348 acatgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacg 9219292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 33807899 - 33807786
Alignment:
Q  20 aaaaaacttagatatgggtggtacact-tagtatattatggacatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgta 118  Q
    |||||| | ||||||||||||| |||  ||||||| ||||||| |  |||||||||||||||||| ||| |||||||| | |||| |||||| ||||| |    
T  33807899 aaaaaaatcagatatgggtggttcaccatagtatactatggaccttaaatcaaacggttataatcatatgaaaaatatcagacattaaaaaattaacgga 33807800  T
Q  119 gaggaccgaaacgg 132  Q
    ||||||| ||||||    
T  33807799 gaggaccaaaacgg 33807786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 29744840 - 29744795
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || |||||||| |||||||||||||||||||    
T  29744840 agttatgggaccaaaccgataccaaataattagttaagggactaaa 29744795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 29751139 - 29751184
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || |||||||| |||||||||||||||||||    
T  29751139 agttatgggaccaaaccgataccaaataattagttaagggactaaa 29751184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 70728 - 70683
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| || || ||||||||||||||||||||||||||||    
T  70728 agttatgggaccaaaccgataccaaaaaattagttaagggactaaa 70683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 71828 - 71873
Alignment:
Q  143 agttatgggactaacccaataccaaaaaattagttaagggactaaa 188  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||    
T  71828 agttatgggaccaaagcgataccaaaaaattagttaagggactaaa 71873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 11875 - 11810
Alignment:
Q  60 acatgcaatcaaacggttataatcgtattaaaaatattatacatcaaaaaactaacgtagaggacc 125  Q
    |||||||||| || ||||| ||||  || |||||||||| |||| |||||||||||| ||||||||    
T  11875 acatgcaatcgaatggttaaaatcacatcaaaaatattagacattaaaaaactaacggagaggacc 11810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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