View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10058_low_10 (Length: 294)
Name: NF10058_low_10
Description: NF10058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10058_low_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 28609207 - 28608924
Alignment:
| Q |
11 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28609207 |
atggacatcaacttctgaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctca |
28609108 |
T |
|
| Q |
111 |
ctatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagtt |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28609107 |
ctatccattacaatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagtt |
28609008 |
T |
|
| Q |
211 |
gggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatac |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609007 |
gggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatac |
28608924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 437697 - 437980
Alignment:
| Q |
11 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||| || |||||| |
|
|
| T |
437697 |
atggacattaacttctgaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctca |
437796 |
T |
|
| Q |
111 |
ctatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagtt |
210 |
Q |
| |
|
||||||||||| ||||||| ||| || || || | ||||||||| |||||| |||||| |||| ||| |||||| |||||||||||||||| | || |
|
|
| T |
437797 |
ctatccattacaatagatagtatcccttgtggttcagcatgacttgaggtgtctactatttcagcattatcaaacaggagcatccgaaccactgataatt |
437896 |
T |
|
| Q |
211 |
gggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatac |
294 |
Q |
| |
|
||||||||| | |||||| ||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
437897 |
gggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatac |
437980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 13660578 - 13660297
Alignment:
| Q |
11 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
110 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||| | |||| | | ||| ||||||| ||| ||||| || || |||| ||||| || |||||| |
|
|
| T |
13660578 |
atggacatcaacctccgaatatgatatagaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctca |
13660479 |
T |
|
| Q |
111 |
ctatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagtt |
210 |
Q |
| |
|
|||||||||| | |||||||||||| | ||| || ||||||| | | | ||| || |||| ||||||||||||||||||||| | | | |
|
|
| T |
13660478 |
ttatccattacaacagataatatgccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatc |
13660379 |
T |
|
| Q |
211 |
gggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaat |
292 |
Q |
| |
|
|||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
13660378 |
gggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaat |
13660297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 13653078 - 13652957
Alignment:
| Q |
11 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
110 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||||||| | |||| | | ||| ||||||| ||| ||||| || || |||| ||||| || |||||| |
|
|
| T |
13653078 |
atggacatcaacctctgaataggatataaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctca |
13652979 |
T |
|
| Q |
111 |
ctatccattaccatagataata |
132 |
Q |
| |
|
|||||||||| | |||||||| |
|
|
| T |
13652978 |
ttatccattacaacagataata |
13652957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University