View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10058_low_3 (Length: 518)
Name: NF10058_low_3
Description: NF10058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10058_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 37070159 - 37070643
Alignment:
| Q |
18 |
gaaccaatcttttaaacctcgtttttgcaccagcagaattcagtgcaatgcgtgtaagttgctgcaaacattacatctatttgtcatatataaaaggaaa |
117 |
Q |
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| T |
37070159 |
gaaccaatcttttaaacctcgtttttgcaccagcagaattcagtgcaatgcgtgtaagttgctgcaaacattacatctatttgtcatatataaaaggaaa |
37070258 |
T |
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| Q |
118 |
aaagataaaggcctaaaactaaagattgtaaatatgtttgaaataattttatatcattcaattgtagaacacttggtgaatggtcctgatcttaaactct |
217 |
Q |
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| T |
37070259 |
aaagataaaggcctaaaactaaagattgtaaatatgtttgaaataattttatatcattcaattgtagaacacttggtgaatggtcctgatcttaaactct |
37070358 |
T |
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| Q |
218 |
tttaagttcaacgaaatttgtttgtcctgattaattttagttaaaaatgagttgaatagtaaacttctaaaaatccaaacctgtcaaaatcaattacact |
317 |
Q |
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| T |
37070359 |
tttaagttcaacgaaatttgtttgtcctgattaatttgagttaaaaatgagttgaatagtaaacttctaaaaatccaaacctgtcaaaatcaattacact |
37070458 |
T |
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| Q |
318 |
tacctctcttgtggatgtatcacgaaattgagaaattgcattgacaaattcaagagctgtttgattgttttggttaaccagatgaagatccactctttca |
417 |
Q |
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| T |
37070459 |
tacctctcttgtggatgtatcacgaaattgagaaattgcattgacaaattcaagagctgtttgattgttttggttaaccagatgaagatccactctttca |
37070558 |
T |
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| Q |
418 |
tcccatgttaagtaaaaaacagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttcttatccttttgat |
502 |
Q |
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| T |
37070559 |
tcccatgttaagtaaaaaacagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttcttatccttttgat |
37070643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 293 - 502
Target Start/End: Original strand, 37080267 - 37080476
Alignment:
| Q |
293 |
caaacctgtcaaaatcaattacacttacctctcttgtggatgtatcacgaaattgagaaattgcattgacaaattcaagagctgtttgattgttttggtt |
392 |
Q |
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| T |
37080267 |
caaacatgtcaaaaccaattctacatacctctctagcggacgaattacgaagttttgaacttgcattgataacttcaacagctgtttggttgttttggtt |
37080366 |
T |
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| Q |
393 |
aaccagatgaagatccactctttcatcccatgttaagtaaaaaacagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttctta |
492 |
Q |
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| T |
37080367 |
aaccagctgcatatccactctttcatcccatgttaagtaaaaaacagctttaggatgacacgattgtgcagccagatgcaaaggagtatctcctttatta |
37080466 |
T |
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| Q |
493 |
tccttttgat |
502 |
Q |
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| T |
37080467 |
tccttttgat |
37080476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 36953857 - 36953791
Alignment:
| Q |
436 |
acagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttcttatccttttgat |
502 |
Q |
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| T |
36953857 |
acagttctaggatgacatgatcttgctgccaaatgcaaaggggtatctcctttattatctttttgat |
36953791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 36953932 - 36953883
Alignment:
| Q |
367 |
tcaagagctgtttgattgttttggttaaccagatgaagatccactctttc |
416 |
Q |
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| T |
36953932 |
tcaagagctgtttcattgttttggttaaccaaattaagtttcactctttc |
36953883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 37079935 - 37080013
Alignment:
| Q |
40 |
ttttgcaccagcagaattcagtgcaatgcgtgtaagttgctgcaaacattacatctatttgtcatatataaaaggaaaaaa |
120 |
Q |
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| T |
37079935 |
ttttacaccagcagaattcaaagccatacgagtaagttgctgcaaacattacatttgt--gttacatataaaaggaaaaaa |
37080013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 12494389 - 12494455
Alignment:
| Q |
436 |
acagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttcttatccttttgat |
502 |
Q |
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| T |
12494389 |
acagttgtaggatgacatgatctcgcagccaaatgcaaaggggtatctcctttattatctttttgat |
12494455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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